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BioLiP
>protein
MKLVMAIIKPFKLDEVREALTSLGIQGLTVSEVKGFFLPKVKVEVAVSDDQYEQVVEAIQKAANTGRIGDGKIFVLDIAQ
AVRIRTGETN

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4cnz:A 100 96 1.0000 0.9000 0.9375 8.58e-58 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
2 4cnz:E 112 108 1.0000 0.8036 0.8333 5.45e-56 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
3 2gnk:A 95 91 0.6667 0.6316 0.6593 1.83e-39
4 2ns1:B 113 108 0.6667 0.5310 0.5556 1.11e-36 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
5 5l9n:A 92 91 0.6333 0.6196 0.6264 1.71e-35
6 2eg2:A 95 89 0.6333 0.6000 0.6404 8.58e-35
7 6yc7:F 94 88 0.5111 0.4894 0.5227 1.04e-31
8 8wm7:G 94 94 0.6222 0.5957 0.5957 7.59e-31
9 1ul3:B 94 90 0.5778 0.5532 0.5778 4.53e-30 1ul3:C
10 4c3k:D 101 94 0.6000 0.5347 0.5745 1.50e-29 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
11 3n5b:A 112 108 0.6222 0.5000 0.5185 1.65e-28 8wm7:E
12 6yc7:A 105 99 0.5111 0.4381 0.4646 3.08e-28 6yc7:B, 6yc7:E, 6yc7:C
13 3lf0:A 99 91 0.5111 0.4646 0.5055 3.42e-28
14 2xbp:A 113 108 0.5889 0.4690 0.4907 4.05e-26 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
15 3lf0:B 112 105 0.5111 0.4107 0.4381 8.95e-26 3lf0:C
16 3ta0:C 99 92 0.5333 0.4848 0.5217 1.80e-25 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
17 2o66:B 108 87 0.4889 0.4074 0.5057 3.54e-25 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
18 7p4v:A 113 106 0.5444 0.4336 0.4623 1.78e-23
19 3ta1:D 115 106 0.5333 0.4174 0.4528 4.44e-23 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
20 1v3s:A 97 95 0.5111 0.4742 0.4842 1.13e-22 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
21 2rd5:D 126 104 0.4889 0.3492 0.4231 3.32e-22 2rd5:C
22 2j9d:B 103 93 0.4889 0.4272 0.4731 5.32e-21 2j9d:H, 2j9d:K
23 7p50:A 121 106 0.4667 0.3471 0.3962 3.29e-19 7p50:B, 7p50:C
24 2j9e:B 119 106 0.4889 0.3697 0.4151 8.24e-19 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
25 3ncr:C 116 106 0.4889 0.3793 0.4151 2.50e-18 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
26 4ozl:A 104 92 0.5111 0.4423 0.5000 3.27e-17 4ozn:B
27 4ozn:A 116 104 0.5111 0.3966 0.4423 2.94e-15 4ozj:A, 4ozn:C
28 4usj:C 142 104 0.4667 0.2958 0.4038 9.32e-15 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 7o4x:A 103 94 0.3556 0.3107 0.3404 3.02e-12
30 4rx6:B 115 100 0.3556 0.2783 0.3200 1.77e-11 4r25:A, 4rx6:A, 4rx6:D
31 3w15:A 336 27 0.1222 0.0327 0.4074 0.26
32 8c6j:V 934 79 0.3000 0.0289 0.3418 0.29 6hys:A, 6hys:B, 6hys:C, 6hys:D, 6hyt:A, 6hyt:B, 6hyt:C, 6hyt:D, 6hyu:A
33 1i1q:A 512 31 0.1333 0.0234 0.3871 1.4
34 1qf6:A 641 44 0.1889 0.0265 0.3864 1.6 7cbg:A, 7cbg:B, 7cbh:A, 7cbh:B, 7cbi:A, 7cbi:B, 1evk:A, 1evk:B, 1evl:A, 1evl:B, 1evl:C, 1evl:D, 1fyf:A, 1fyf:B, 8h98:B, 8h98:A, 8h99:A, 8h99:B, 8h9a:A, 8h9b:A, 8h9c:A, 4hwo:A, 4hwo:B, 4hwp:A, 4hwp:B, 4hwr:A, 4hwr:B, 4hws:A, 4hws:B, 1kog:A, 1kog:B, 1kog:C, 1kog:D, 1kog:E, 1kog:F, 1kog:G, 1kog:H, 6l2p:A, 6l2p:B, 6l2q:A, 6l2q:B, 8ou8:D, 8ou8:A, 4p3o:A, 4p3o:B, 4p3p:A, 4p3p:B, 8qic:A, 8qic:D, 1tke:A, 1tkg:A, 1tky:A, 8wia:A, 8wia:B, 8wig:A, 8wig:B, 8wih:A, 8wih:B, 8wii:A, 8wii:B, 8wij:B, 8wij:A, 7wm7:A, 7wm7:B, 7wmf:A, 7wmf:B, 7wmi:A, 7wmi:B
35 3qsy:A 415 56 0.2111 0.0458 0.3393 1.8 2aho:A, 3cw2:B, 6i5m:A, 5jb3:7, 5jbh:7, 4m0l:A, 4m0l:B, 4m0l:C, 4m0l:D, 4m0l:E, 4m0l:F, 4m2l:A, 4m4s:A, 4nbs:A, 3pen:A, 2pmd:A, 2pmd:B, 4qfm:A, 4qhy:A, 2qmu:A, 2qn6:A, 6r8s:A, 6r8t:A, 4rcy:A, 4rcz:A, 4rd0:A, 4rd1:A, 4rd2:A, 4rd3:A, 4rd4:A, 4rd6:A, 4rjl:A, 3sjz:A, 6sw9:7, 6swc:7, 3v11:A
36 6ywx:e 150 57 0.1889 0.1133 0.2982 2.4 6ywy:e
37 3t0q:A 304 25 0.1222 0.0362 0.4400 2.9
38 6ok4:A 334 51 0.2000 0.0539 0.3529 3.6 6ok4:B, 6ok4:C, 6ok4:D, 6wyc:A, 6wyc:B, 6wyc:C, 6wyc:D, 6x2e:A, 6x2e:C, 6x2e:D
39 7syv:x 627 39 0.1667 0.0239 0.3846 4.0 8pj3:0, 8pj4:0, 8pj5:0, 7syw:x, 7syx:x, 7tql:1, 4ujc:AB, 4ujd:BB
40 3rwr:M 227 68 0.2111 0.0837 0.2794 4.3 3rwr:X
41 4wm0:A 299 47 0.2000 0.0602 0.3830 4.6 4wlm:A, 4wlm:B, 4wlz:A, 4wlz:B, 4wma:A, 4wmb:A, 4wmi:A, 4wmk:A, 4wn2:A, 4wnh:A
42 4ltm:A 187 46 0.1556 0.0749 0.3043 4.8 4ltn:A
43 7qos:A 352 41 0.1444 0.0369 0.3171 7.1 7qos:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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