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BioLiP
>protein
MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIP
VVEAIAQRFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSL
ACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAKENKRYE

The query sequence (length=282) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1aj0:A 282 282 1.0000 1.0000 1.0000 0.0 1aj2:A, 7tq1:A, 7tq1:B, 5u0v:A, 5u0w:A, 5u0w:B, 5u0y:A, 5u0y:B, 5u0z:A, 5u0z:B, 5u10:A, 5u10:B, 5u11:A, 5u11:B, 5u12:A, 5u12:B, 5u13:A, 5u13:B, 5u14:A, 5u14:B, 5v79:A, 5v79:B, 5v7a:A, 5v7a:B
2 5u0v:B 249 277 0.8794 0.9960 0.8953 3.30e-174
3 3tyz:B 276 276 0.7340 0.7500 0.7500 3.27e-155 5jq9:A, 5jq9:B, 3tyu:A, 3tyz:A, 3tzf:A, 3tzf:B
4 3tyu:B 238 276 0.6206 0.7353 0.6341 2.49e-117
5 6day:D 273 271 0.4858 0.5018 0.5055 9.92e-90 6day:A, 6day:B, 6day:C, 6ofw:A, 6ofw:B, 6q62:A, 6q62:C, 6q62:D, 6q62:B
6 6pz2:A 263 258 0.3936 0.4221 0.4302 1.10e-71
7 3tr9:A 277 266 0.4184 0.4260 0.4436 1.32e-70 3tr9:B, 3tr9:C, 3tr9:D
8 2y5s:B 281 278 0.4255 0.4270 0.4317 2.18e-62 2y5s:A
9 2dza:B 257 271 0.4113 0.4514 0.4280 1.31e-61 2dzb:A, 2dzb:B
10 6omz:A 274 270 0.3830 0.3942 0.4000 1.12e-58
11 3h2a:B 277 258 0.3546 0.3610 0.3876 1.17e-54 4d8a:A, 4d8a:B, 4d8z:A, 4d8z:B, 4d9p:A, 4d9p:B, 4daf:A, 4daf:B, 4dai:A, 4dai:B, 4db7:A, 4db7:B, 3h21:A, 3h21:B, 3h22:A, 3h22:B, 3h23:A, 3h23:B, 3h24:A, 3h24:B, 3h26:A, 3h26:B, 3h2a:A, 3h2c:A, 3h2c:B, 3h2e:B, 3h2f:A, 3h2f:B, 3h2m:A, 3h2m:B, 3h2n:A, 3h2n:B, 3h2o:A, 3h2o:B, 4nil:A, 4nir:A, 4nir:B, 4nl1:A, 4nl1:B, 1tww:A, 1tww:B, 1twz:A, 1twz:B, 1tx0:A, 1tx0:B, 1tx2:A, 1tx2:B, 3tya:A, 3tya:B, 3tyb:A, 3tyb:B, 3tyc:A, 3tyc:B, 3tyd:A, 3tyd:B, 3tye:A, 3tye:B
12 1eye:A 256 270 0.3688 0.4062 0.3852 1.42e-49
13 8scd:A 264 261 0.3262 0.3485 0.3525 2.91e-47 7s2m:A, 7s2m:B, 7s2m:C
14 8d5h:B 274 260 0.3191 0.3285 0.3462 8.23e-45 8d5g:A, 8d5g:B, 8d5h:A, 8d5i:A, 8d5i:B
15 6clv:C 257 272 0.3511 0.3852 0.3640 2.13e-41 1ad4:A, 6clv:A, 6clv:B
16 6ucz:B 265 257 0.3050 0.3245 0.3346 2.74e-38 6ucz:A
17 7s2k:A 268 268 0.3156 0.3321 0.3321 1.73e-34 7s2k:B
18 7s2i:A 264 244 0.2766 0.2955 0.3197 2.25e-33 7s2i:B
19 2bmb:A 513 339 0.3440 0.1891 0.2861 1.28e-32
20 6jwz:B 565 285 0.3014 0.1504 0.2982 5.78e-31 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
21 5z79:B 562 281 0.3014 0.1512 0.3025 1.20e-30
22 6jwq:B 590 297 0.3085 0.1475 0.2929 1.44e-30 6jwq:A, 6jws:A, 6jws:B, 6jwt:A, 6jwt:B, 6jwu:A, 6jwz:A, 6kck:A, 6kck:B, 6kcm:B
23 5z79:C 599 297 0.3121 0.1469 0.2963 5.66e-29 5z79:A, 5z79:D, 5z79:E, 5z79:F
24 2vef:A 279 274 0.3191 0.3226 0.3285 1.00e-26 2veg:A
25 6kcl:B 545 276 0.2837 0.1468 0.2899 8.71e-25 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B
26 8sl9:A 422 258 0.2695 0.1801 0.2946 4.75e-18 4pzv:A
27 3mco:A 397 261 0.2660 0.1889 0.2874 7.72e-13 3mcn:B, 3mco:B
28 3mcm:A 368 255 0.2340 0.1793 0.2588 2.21e-07 3mcn:A
29 9b0e:A 821 121 0.1135 0.0390 0.2645 0.26 9aym:A, 9aym:B, 9b0e:B, 9b0i:A, 9b0i:B
30 1gpm:A 501 89 0.0745 0.0419 0.2360 0.59 1gpm:B, 1gpm:C, 1gpm:D
31 4kpu:B 263 61 0.0603 0.0646 0.2787 0.73 4l2i:B
32 6mf2:A 1222 85 0.0780 0.0180 0.2588 1.8 4bdv:A, 4bdv:B, 3cdz:B, 3j2q:B, 5k8d:A, 5k8d:B, 2r7e:B
33 6d2v:A 315 62 0.0816 0.0730 0.3710 2.0 6d2v:B, 6nd7:A, 6nd7:B
34 2v7o:A 306 56 0.0532 0.0490 0.2679 2.1 3bhh:A, 3bhh:B
35 6khm:K 312 41 0.0532 0.0481 0.3659 2.5 6khl:A, 6khl:B, 6khm:A, 6khm:B, 6khm:C, 6khm:D, 6khm:E, 6khm:F, 6khm:G, 6khm:H, 6khm:I, 6khm:J, 6khm:L, 6khm:M, 6khm:N, 6khm:O, 6khm:P, 6khm:Q, 6khm:R, 6khm:S, 6khm:T, 6khm:U, 6khm:V, 6khm:X, 6khm:Y, 6khm:W, 6khm:Z
36 7mq8:NJ 827 114 0.1028 0.0351 0.2544 2.6 7mq8:NK, 7mq9:NJ, 7mq9:NK
37 4qbj:A 396 147 0.1277 0.0909 0.2449 8.3 4cav:A, 4caw:A, 4cax:A, 5t5u:A, 5t6c:A, 5t6e:A, 5t6h:A, 4uwi:A, 4uwj:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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