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BioLiP
>protein
MKKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVEE

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6gps:A 330 54 0.9444 0.1545 0.9444 1.49e-38 6gpx:A
2 4xnw:C 350 54 0.9444 0.1457 0.9444 2.97e-38 4xnv:A, 4xnw:A
3 6bd4:A 379 54 0.9444 0.1346 0.9444 8.96e-38
4 5xpd:A 269 52 0.9074 0.1822 0.9423 1.57e-37
5 5vbl:B 353 54 0.9444 0.1445 0.9444 2.64e-37 6knm:B, 7sus:A
6 6iiv:A 461 54 0.9444 0.1106 0.9444 3.86e-37 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
7 6li2:A 347 54 0.9444 0.1470 0.9444 6.34e-37
8 6ln2:A 437 54 0.9444 0.1167 0.9444 1.90e-36 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
9 6me8:A 449 53 0.9259 0.1114 0.9434 4.51e-36 6me6:A, 6me7:A, 6me9:A
10 7f1t:A 423 54 0.9259 0.1182 0.9259 1.20e-34 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
11 2pve:A 52 52 0.8148 0.8462 0.8462 1.56e-28 2pve:B, 2pve:C
12 2pvx:B 54 54 0.7037 0.7037 0.7037 2.72e-25 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
13 1yk5:A 53 53 0.6296 0.6415 0.6415 8.21e-23 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
14 2kkd:A 52 52 0.6667 0.6923 0.6923 1.85e-22 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
15 5ai2:A 54 54 0.5926 0.5926 0.5926 1.63e-21 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
16 2dsx:A 52 51 0.6111 0.6346 0.6471 9.74e-21 1rdg:A
17 7e0l:A 491 51 0.5741 0.0631 0.6078 6.06e-19 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
18 2v3b:B 53 53 0.5556 0.5660 0.5660 1.55e-17
19 2ms3:A 57 50 0.4444 0.4211 0.4800 4.75e-14
20 1s24:A 56 52 0.5000 0.4821 0.5192 8.40e-14
21 2kn9:A 81 52 0.5000 0.3333 0.5192 1.06e-13 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
22 1dx8:A 70 52 0.4444 0.3429 0.4615 1.58e-13 1h7v:A
23 8f6t:A 428 42 0.4444 0.0561 0.5714 5.22e-13
24 6rxn:A 45 50 0.4630 0.5556 0.5000 4.46e-12
25 8ito:B 74 44 0.4074 0.2973 0.5000 3.87e-11 8ito:A
26 8ouw:2 701 48 0.3148 0.0243 0.3542 0.038
27 6rax:2 605 40 0.2222 0.0198 0.3000 0.73 6raw:2, 6ray:2
28 6asb:I 121 37 0.2593 0.1157 0.3784 0.78 6asb:C, 6asb:L
29 2hr5:A 170 48 0.2593 0.0824 0.2917 1.3 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H
30 2d1g:A 481 32 0.2407 0.0270 0.4062 1.3 2d1g:B
31 8ewg:A 1017 22 0.2037 0.0108 0.5000 1.5
32 3fhz:D 166 15 0.1852 0.0602 0.6667 1.6 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
33 3i74:A 642 30 0.1852 0.0156 0.3333 2.0 3i74:B
34 1yux:B 202 48 0.2778 0.0743 0.3125 2.0 1yux:A, 1yuz:A, 1yuz:B, 1yv1:A, 1yv1:B
35 7w1y:2 706 42 0.2222 0.0170 0.2857 2.8 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2
36 3s6h:A 436 24 0.2222 0.0275 0.5000 3.5 4kzt:A, 4kzt:B, 4kzt:X, 4kzt:Y, 3s6g:B, 3s6g:Y, 3s6h:X, 3s6h:B, 3s6h:Y
37 8fac:A 1377 24 0.1667 0.0065 0.3750 4.3 8e04:A
38 8b37:B 681 13 0.1296 0.0103 0.5385 4.6 8b37:A
39 8e05:A 1749 24 0.1667 0.0051 0.3750 4.7 8e05:B, 8e06:A
40 5zrt:A 160 29 0.2037 0.0688 0.3793 5.8 5zlq:A, 5zrt:B
41 5ui3:C 306 17 0.1667 0.0294 0.5294 5.8 5ui3:D, 5ui3:A, 5ui3:B
42 4fmm:B 325 19 0.2037 0.0338 0.5789 6.9 4j7q:A, 4j7q:B
43 5t53:A 187 13 0.1481 0.0428 0.6154 7.2
44 3vcr:A 216 18 0.1481 0.0370 0.4444 8.3 3vcr:B
45 1eom:A 283 14 0.1667 0.0318 0.6429 9.4
46 7r7j:B 574 41 0.2037 0.0192 0.2683 9.8 8h5y:B, 8h5y:A, 8h5z:B, 8h5z:A, 6jde:B, 6jde:A, 7r7j:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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