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BioLiP
>protein
MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGREFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSP
VDQTIRIRTGEKNADA

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3k:D 101 97 1.0000 0.9505 0.9897 1.72e-61 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
2 2xbp:A 113 111 0.9896 0.8407 0.8559 2.59e-58 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
3 8wm7:G 94 94 0.8750 0.8936 0.8936 1.76e-54
4 3n5b:A 112 111 0.8854 0.7589 0.7658 2.37e-53 8wm7:E
5 1ul3:B 94 96 0.8021 0.8191 0.8021 6.14e-50 1ul3:C
6 3lf0:A 99 96 0.5938 0.5758 0.5938 1.37e-39
7 3lf0:B 112 110 0.5938 0.5089 0.5182 1.03e-35 3lf0:C
8 2eg2:A 95 96 0.6250 0.6316 0.6250 3.97e-34
9 4cnz:A 100 99 0.5938 0.5700 0.5758 1.34e-32 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
10 5l9n:A 92 93 0.6042 0.6304 0.6237 1.65e-32
11 4cnz:E 112 111 0.5938 0.5089 0.5135 9.83e-31 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 2o66:B 108 94 0.5521 0.4907 0.5638 1.82e-30 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
13 7p4v:A 113 111 0.6146 0.5221 0.5315 4.78e-30
14 2j9d:B 103 98 0.5833 0.5437 0.5714 4.21e-29 2j9d:H, 2j9d:K
15 2rd5:D 126 110 0.5625 0.4286 0.4909 8.60e-29 2rd5:C
16 3ta0:C 99 97 0.5417 0.5253 0.5361 4.51e-28 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
17 2j9e:B 119 111 0.6042 0.4874 0.5225 8.44e-28 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
18 2gnk:A 95 96 0.5312 0.5368 0.5312 9.05e-28
19 6yc7:F 94 96 0.4688 0.4787 0.4688 4.96e-27
20 2ns1:B 113 111 0.5417 0.4602 0.4685 6.85e-27 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
21 6yc7:A 105 104 0.4688 0.4286 0.4327 4.52e-26 6yc7:B, 6yc7:E, 6yc7:C
22 7p50:A 121 111 0.5521 0.4380 0.4775 6.58e-26 7p50:B, 7p50:C
23 3ta1:D 115 111 0.5417 0.4522 0.4685 6.72e-26 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
24 3ncr:C 116 111 0.5625 0.4655 0.4865 1.76e-24 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
25 1v3s:A 97 95 0.5104 0.5052 0.5158 2.09e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
26 4usj:C 142 110 0.5208 0.3521 0.4545 3.21e-20 4usi:A, 4usi:C, 4usi:B, 4usj:D
27 4ozl:A 104 96 0.4896 0.4519 0.4896 7.95e-20 4ozn:B
28 7o4x:A 103 99 0.4271 0.3981 0.4141 4.83e-19
29 4ozn:A 116 108 0.4896 0.4052 0.4352 2.95e-16 4ozj:A, 4ozn:C
30 4rx6:B 115 111 0.4062 0.3391 0.3514 1.03e-14 4r25:A, 4rx6:A, 4rx6:D
31 6cxs:B 599 40 0.1354 0.0217 0.3250 1.6 6cxs:A
32 5kf0:A 480 37 0.1562 0.0312 0.4054 2.0 5jry:A, 5kf0:B, 5kf0:C, 5kf0:D
33 3mcx:A 459 67 0.1458 0.0305 0.2090 3.5
34 3lvt:A 833 52 0.1771 0.0204 0.3269 4.7
35 1tyg:A 242 92 0.2708 0.1074 0.2826 4.9 1tyg:C
36 8wm6:k 180 33 0.1354 0.0722 0.3939 5.2 8wmj:k, 8wmv:k, 8wmw:k
37 3w15:A 336 26 0.0938 0.0268 0.3462 5.6
38 8rd8:C1 49 25 0.1250 0.2449 0.4800 8.4 8rdv:C1, 8rdw:C1
39 3t0q:A 304 55 0.1667 0.0526 0.2909 9.1
40 7qfw:A 823 50 0.1875 0.0219 0.3600 9.9 5oqn:A, 5oqo:A, 5oqp:A, 7q2z:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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