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BioLiP
>protein
MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVD
QTIRIRTGEKNADAISAW

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4c3k:D 101 101 1.0000 0.9703 0.9703 5.90e-63 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
2 2xbp:A 113 113 0.9694 0.8407 0.8407 7.38e-58 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
3 8wm7:G 94 94 0.8367 0.8723 0.8723 1.10e-52
4 3n5b:A 112 112 0.8469 0.7411 0.7411 6.46e-52 8wm7:E
5 1ul3:B 94 95 0.7959 0.8298 0.8211 4.73e-51 1ul3:C
6 2eg2:A 95 95 0.6224 0.6421 0.6421 7.14e-37
7 3lf0:A 99 97 0.5612 0.5556 0.5670 8.28e-36
8 5l9n:A 92 91 0.5918 0.6304 0.6374 1.18e-34
9 3lf0:B 112 111 0.5612 0.4911 0.4955 1.29e-33 3lf0:C
10 2o66:B 108 93 0.5408 0.4907 0.5699 1.65e-30 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
11 4cnz:A 100 100 0.5612 0.5500 0.5500 1.75e-30 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
12 7p4v:A 113 112 0.5816 0.5044 0.5089 1.41e-29
13 2j9d:B 103 99 0.5612 0.5340 0.5556 5.30e-29 2j9d:H, 2j9d:K
14 2gnk:A 95 95 0.5102 0.5263 0.5263 8.61e-29
15 4cnz:E 112 112 0.5612 0.4911 0.4911 1.08e-28 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
16 2rd5:D 126 110 0.5408 0.4206 0.4818 1.44e-27 2rd5:C
17 6yc7:F 94 95 0.4592 0.4787 0.4737 2.38e-27
18 3ta0:C 99 97 0.5204 0.5152 0.5258 2.54e-27 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
19 2j9e:B 119 112 0.5612 0.4622 0.4911 6.65e-27 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
20 6yc7:A 105 105 0.4592 0.4286 0.4286 4.47e-26 6yc7:B, 6yc7:E, 6yc7:C
21 7p50:A 121 112 0.5204 0.4215 0.4554 2.04e-25 7p50:B, 7p50:C
22 3ta1:D 115 111 0.5204 0.4435 0.4595 5.23e-25 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
23 2ns1:B 113 112 0.5102 0.4425 0.4464 9.02e-25 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
24 1v3s:A 97 95 0.4898 0.4948 0.5053 1.51e-23 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
25 3ncr:C 116 115 0.5408 0.4569 0.4609 2.10e-23 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
26 7o4x:A 103 103 0.4388 0.4175 0.4175 1.46e-21
27 4usj:C 142 110 0.5000 0.3451 0.4455 6.49e-19 4usi:A, 4usi:C, 4usi:B, 4usj:D
28 4ozl:A 104 97 0.4796 0.4519 0.4845 1.33e-18 4ozn:B
29 4ozn:A 116 109 0.4898 0.4138 0.4404 7.29e-16 4ozj:A, 4ozn:C
30 4rx6:B 115 112 0.3878 0.3304 0.3393 6.42e-14 4r25:A, 4rx6:A, 4rx6:D
31 5ve7:A 282 49 0.1735 0.0603 0.3469 0.56
32 6cxs:B 599 54 0.1633 0.0267 0.2963 1.3 6cxs:A
33 7d9x:A 336 46 0.2041 0.0595 0.4348 2.5 7d9x:C
34 4reu:A 164 43 0.1429 0.0854 0.3256 2.6 4reu:B, 4reu:C, 4reu:D, 4reu:E, 4reu:F, 4xgs:A, 4xgs:B, 4xgs:C, 4xgs:D, 4xgs:E, 4xgs:F, 4ztt:A, 4ztt:B, 4ztt:C, 4ztt:D, 4ztt:E, 4ztt:F
35 4wk1:A 92 80 0.2143 0.2283 0.2625 3.4
36 5kf0:A 480 56 0.1837 0.0375 0.3214 3.8 5jry:A, 5kf0:B, 5kf0:C, 5kf0:D
37 1uyr:A 698 66 0.2347 0.0330 0.3485 5.0 5ctb:B, 3h0j:A, 3h0j:B, 3h0j:C, 3h0q:A, 3h0q:B, 3h0q:C, 3h0s:B, 3h0s:C, 1od4:C, 3pgq:B, 1uyr:B, 1uys:A, 1uys:B, 1uys:C, 1w2x:A, 1w2x:C, 1w2x:B
38 3sig:A 265 41 0.1429 0.0528 0.3415 5.3 3sii:A
39 3lvt:A 833 52 0.1735 0.0204 0.3269 5.5
40 4yd9:A 1656 84 0.1939 0.0115 0.2262 5.6 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
41 3w15:A 336 26 0.0918 0.0268 0.3462 5.9
42 3k6j:A 430 38 0.1327 0.0302 0.3421 7.1
43 9b1u:A 298 65 0.2245 0.0738 0.3385 7.1 9b1v:A
44 2r02:A 697 71 0.2347 0.0330 0.3239 7.4 3c3o:A, 3c3q:A, 3c3r:A, 2r03:A, 2r05:A, 5v3r:A, 5wa1:A, 2xs1:A, 2xs8:A
45 8wm6:k 180 32 0.1327 0.0722 0.4062 8.0 8wmj:k, 8wmv:k, 8wmw:k
46 7qfw:A 823 48 0.1837 0.0219 0.3750 8.6 5oqn:A, 5oqo:A, 5oqp:A, 7q2z:E
47 3t0q:A 304 55 0.1633 0.0526 0.2909 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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