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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MKITNPVLKGFNPDPSICRAGEDYYMAVSTFEWFPGVQIYHSKDLIHWRLAARPLQKTSQLDMKGNPDSGGVWAPCLSYA
DGQFWLIYSDIKVVDGPFKDGHNYLVTADAVDGEWSDPVRLNSSGFDPSLFHDPSGKKYVLNMLWDHREKHHSFAGIALQ
EYSVSEKKLVGERKVIFKGTPIKLTQAPHLYYINDVYYLLTAEGGTRYEHAATIARSSRIDGPYEVHPDNPILTAFHAPS
HPLQKCGHASIVQTHTNEWYLAHLTGRPIHSSKESIFQQRGWCPLGRETAIQKLEWKDGWPYVVGGKEGLLEVEAPAMSV
KEFSPTYHIVDEFKDSSLNRHFQTLRIPFTDQIGSVTENPHHLRLYGQESLTSKFTQAFVARRWQSFYFEAETAVSFFPK
NFQQAAGLVNYYNTENWTALQVTYDDALGRILELSVCENLAFSQPLIKKIIIPDEIPYVYLKVTVQRETYTYSYSFDQQE
WEKIDVPLESTHLSDDFIRGGGYFTGAFVGMQCQDTSGERLPADFKYFRYEET

The query sequence (length=533) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5zqx:A 536 533 0.9981 0.9925 0.9981 0.0 5zqs:A, 5zqs:B, 5zqx:B, 5zqx:C, 5zqx:D
2 2exh:A 533 532 0.6510 0.6510 0.6523 0.0 2exh:B, 2exh:C, 2exh:D, 2exi:A, 2exi:B, 2exi:C, 2exi:D, 2exj:A, 2exj:B, 2exj:C, 2exj:D, 2exk:A, 2exk:B, 2exk:C, 2exk:D
3 1y7b:A 534 531 0.6041 0.6030 0.6064 0.0 1y7b:B, 1y7b:C, 1y7b:D, 1yi7:A, 1yi7:B, 1yi7:C, 1yi7:D
4 7k1r:A 536 534 0.5235 0.5205 0.5225 0.0 7k1r:B, 7k1r:C, 7k1r:D, 8uws:C, 8uws:D, 8uws:A, 8uws:B
5 6ms3:A 512 537 0.3358 0.3496 0.3333 5.57e-83 6ms2:A, 6ms3:B
6 5z5d:A 504 539 0.3358 0.3552 0.3321 2.31e-80 5z5f:A, 5z5h:A, 5z5i:A
7 5joz:A 507 543 0.3396 0.3570 0.3333 5.65e-74 5joz:B
8 5jox:A 502 535 0.3096 0.3287 0.3084 1.57e-65 5jox:B, 5joy:A, 5joy:B
9 3zxk:A 530 394 0.1764 0.1774 0.2386 5.56e-09 3zxk:B
10 4kc8:A 449 324 0.1426 0.1693 0.2346 4.83e-07
11 1uv4:A 291 228 0.1069 0.1959 0.2500 1.06e-04
12 1gye:B 315 237 0.1144 0.1937 0.2574 1.33e-04
13 6a8i:A 318 230 0.1032 0.1730 0.2391 2.39e-04 6a8h:A, 6a8i:B, 3d5z:A, 3d61:A, 6f1g:A
14 6b7k:A 290 229 0.1069 0.1966 0.2489 0.002 6b7k:B, 6b7k:C, 6b7k:D
15 5msx:C 440 246 0.1013 0.1227 0.2195 0.006 5msx:A, 5msx:B
16 3lv4:A 441 245 0.1107 0.1338 0.2408 0.010 3lv4:B
17 8hcj:D 433 193 0.0826 0.1016 0.2280 0.14 8hcj:E, 8hcj:H, 8hcj:A, 8hcj:B, 8hcj:G, 8hcj:C, 8hcj:F
18 3vsz:C 482 184 0.0807 0.0892 0.2337 0.44 3vsz:A, 3vsz:B, 3vsz:E, 3vsz:F, 3vt0:A, 3vt0:B, 3vt0:C, 3vt0:E, 3vt0:F, 3vt1:B, 3vt1:C, 3vt1:E, 3vt1:F, 3vt1:A, 3vt2:A, 3vt2:B, 3vt2:C, 3vt2:D, 3vt2:E, 3vt2:F
19 8d4i:A 462 93 0.0525 0.0606 0.3011 0.75 8d2y:A, 8d4i:C, 8d5d:A, 8d5d:B, 8d5r:A, 8d5r:B, 8d88:A, 8d88:B
20 5oql:M 284 51 0.0338 0.0634 0.3529 0.77
21 6euf:A 472 359 0.1463 0.1653 0.2173 0.84 6euf:B, 6euf:C, 6euf:D
22 5c0p:A 284 217 0.0938 0.1761 0.2304 1.2
23 5vit:A 548 123 0.0619 0.0602 0.2683 2.8 5vit:P, 5vit:I, 5vit:V
24 5m8e:A 323 89 0.0432 0.0712 0.2584 2.9 5m8e:B
25 4u6b:A 343 39 0.0281 0.0437 0.3846 2.9 4u6b:B, 4u6b:C, 4u6b:D
26 3ugg:A 524 114 0.0600 0.0611 0.2807 2.9 3ugg:B, 3ugh:B
27 4g8b:A 277 75 0.0413 0.0794 0.2933 3.3 4g8b:B, 4g8c:A, 4g8c:B, 4g9e:A, 4g9e:B
28 3cgh:A 507 156 0.0732 0.0769 0.2500 3.6 8uwv:A
29 5gll:A 331 84 0.0507 0.0816 0.3214 3.8 5glk:B, 5glm:A, 5glm:B, 5gln:A, 5gln:B, 5glo:A, 5glo:B, 5glp:A, 5glp:B, 5glq:A, 5glq:B, 5glr:A, 5glr:B
30 4fxq:A 445 84 0.0469 0.0562 0.2976 4.5 4fk7:A, 4fxq:B
31 5u4h:A 420 56 0.0356 0.0452 0.3393 4.6 5u4h:B
32 7vml:A 4044 52 0.0338 0.0045 0.3462 6.7 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D
33 1w1d:A 143 35 0.0263 0.0979 0.4000 7.0 1w1g:A
34 7vcp:A 490 40 0.0263 0.0286 0.3500 8.5
35 8esq:n 433 51 0.0338 0.0416 0.3529 8.6 8esr:n, 8etg:n, 8eti:n, 8ev3:n
36 8eui:n 361 51 0.0338 0.0499 0.3529 9.0 8eug:n

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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