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BioLiP
>protein
MKISDAVVSAHIDDEVVLLHLQTGTYFGLDAVGSRIWSLLEEGKRPEEIVDAICAEYSVDRPTVERDLRDFLRALANKEL
LEGYAD

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5v1v:A 88 86 1.0000 0.9773 1.0000 4.73e-59 5v1u:A, 5v1u:B, 5v1u:C, 5v1u:D, 5v1v:B
2 6jx3:B 85 66 0.2326 0.2353 0.3030 2.56e-04
3 6fdz:U 265 53 0.1977 0.0642 0.3208 0.80 6fdy:U
4 6u0o:B 288 26 0.1395 0.0417 0.4615 1.4
5 3t37:A 509 39 0.1395 0.0236 0.3077 1.7 4ha6:A
6 1g7s:A 576 88 0.2907 0.0434 0.2841 1.8 1g7t:A
7 6oko:A 263 50 0.1860 0.0608 0.3200 2.7 6oko:B
8 6or5:A 2058 50 0.1512 0.0063 0.2600 2.9
9 1gvr:A 364 14 0.1047 0.0247 0.6429 3.0 2aba:A, 2abb:A, 3f03:K, 6gi7:A, 6gi8:A, 6gi9:A, 6gia:A, 1gvo:A, 1gvq:A, 1gvs:A, 1h50:A, 1h51:A, 1h60:A, 1h61:A, 1h62:A, 1h63:A, 3kft:A, 3kft:B, 5lgx:A, 5lgz:A, 3p62:A, 3p67:A, 3p74:A, 3p7y:A, 3p80:A, 3p81:A, 3p82:A, 3p84:A, 3p8i:A, 3p8j:A, 1vyp:X, 1vyr:A, 1vys:X
10 1xag:A 353 27 0.1744 0.0425 0.5556 3.8 1xah:A, 1xah:B, 1xai:A, 1xai:B, 1xaj:A, 1xaj:B, 1xal:A, 1xal:B
11 4m69:A 287 35 0.1512 0.0453 0.3714 4.1
12 3gfy:B 374 34 0.1512 0.0348 0.3824 5.6 3gfy:A
13 4lmb:A 310 29 0.1395 0.0387 0.4138 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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