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BioLiP
>protein
MKICKACSSCMVRTYVDGNIIFRCSCGESVQGDSQNLLVSSKVYHTGEMEDKYKIFIKNAPFDPTNCQIKKDCPNCHLDY
LTQICIGSQKIIILVCRCGYMSNRG

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q3b:I 105 105 1.0000 1.0000 1.0000 6.36e-75 8q3k:I
2 1z2n:X 311 44 0.0952 0.0322 0.2273 2.6 1z2o:X, 1z2p:X
3 2y4e:A 384 45 0.1524 0.0417 0.3556 3.4 3o72:A, 3o72:B, 3o72:C, 3o72:D, 2y4e:B, 2y4f:A, 2y4f:B
4 5zeb:4 50 22 0.1143 0.2400 0.5455 6.6 8kab:c, 5o60:c, 5o61:c, 7s0s:d, 8v9j:5, 8v9k:5, 8v9l:5, 8whx:6, 8why:6, 8wi7:6, 8wi8:6, 8wib:6, 8wic:6, 7xam:c, 8xz3:c, 7y41:c, 5zep:1, 5zet:4
5 5eyw:A 244 28 0.0952 0.0410 0.3571 6.6 5eyw:B
6 5swi:B 693 64 0.1810 0.0274 0.2969 7.3 5swi:A, 5swi:C, 5swi:D
7 7msc:1 49 22 0.1048 0.2245 0.5000 7.6 7f0d:1, 7kgb:1, 7msh:1, 7msm:1, 7msz:1, 7mt2:1, 7mt3:1, 7mt7:1, 7sfr:1, 5v7q:1, 5v93:1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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