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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKGYTVPLSPRGIANLAPAPPWHYAGTVVGVEFFTDPAAAAATLPEGLTPDPDSAGRGVAMFIDWQYSSTGLEYLDPARS
QYREFLITLDAHCNGAPVAWCPYIYVDNDAAMARGWVQGFPKKLGAVHQTRAYSVGGPGTPVLGPGGQFGATASSAGQRI
AEAKITLEQPVPDPAALMSRPVINLRHFPRLAAGQHDQPAVHELVMSVLDDTAVSDAWVGTADLAFLPAHGEELADLPVR
RTGKGFHFDLAFTVTDLMTLADHS

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6eej:A 264 264 1.0000 1.0000 1.0000 0.0 6eej:B, 6eej:C, 6eej:D, 4zbt:A, 4zbt:B, 4zbt:C, 4zbt:D
2 4jmd:B 262 263 0.3864 0.3893 0.3878 1.17e-50 4jmc:A, 4jmc:B, 4jmd:A, 4jme:A, 4jme:B
3 7ane:ad 694 59 0.0833 0.0317 0.3729 0.31
4 7aor:ad 801 109 0.1288 0.0424 0.3119 0.34
5 1ss9:A 280 29 0.0530 0.0500 0.4828 0.39 1g9r:A, 1ga8:A
6 3bh3:D 245 250 0.2386 0.2571 0.2520 0.52 3bh3:A, 3bh3:B, 3bh3:C
7 2iuj:A 833 54 0.0720 0.0228 0.3519 0.98
8 6hiv:DD 791 59 0.0833 0.0278 0.3729 1.1 6hiw:DD, 6hiy:DD, 7pua:DD, 7pub:DD, 6sga:DD, 6sgb:DD
9 6eqo:A 1804 57 0.0568 0.0083 0.2632 5.1 6eqo:B
10 2xrc:B 485 29 0.0455 0.0247 0.4138 6.4 5o32:D, 5o32:H, 2xrc:A, 2xrc:D
11 2xrc:C 454 29 0.0455 0.0264 0.4138 7.0
12 7dsn:A 471 84 0.0833 0.0467 0.2619 7.1 2dh3:A, 6jmq:B
13 8an2:AAA 1040 190 0.1780 0.0452 0.2474 7.4 8an3:AAA, 7zcx:AAA
14 5zi5:A 850 73 0.0644 0.0200 0.2329 9.1 5zi5:B, 5zi7:A, 5zi7:B, 5zie:A, 5zie:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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