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BioLiP
>protein
MKEKIRKKILLAPEEPGVYIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEANLI
KKYRPKYAVR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yd2:A 90 90 0.9778 0.9778 0.9778 2.25e-58 1yd0:A, 1yd1:A, 1yd3:A, 1yd4:A, 1yd5:A
2 7uws:E 422 31 0.1556 0.0332 0.4516 0.47 6bjy:A, 6bjy:B, 6bjy:C, 6bjy:D, 6bjy:E, 2gic:A, 2gic:B, 2gic:C, 2gic:D, 2gic:E, 3hhz:K, 3hhz:L, 3hhz:M, 3hhz:N, 3hhz:O, 3pmk:A, 3pmk:D, 3pmk:B, 3pmk:C, 3ptx:A, 3ptx:B, 3ptx:C, 3ptx:D, 3ptx:E, 3pu0:A, 3pu0:B, 3pu0:C, 3pu0:D, 3pu0:E, 3pu1:A, 3pu1:B, 3pu1:C, 3pu1:D, 3pu1:E, 3pu4:A, 3pu4:B, 3pu4:C, 3pu4:D, 3pu4:E, 5uk4:P, 5uk4:Q, 5uk4:N, 5uk4:M, 5uk4:O, 5uk4:R, 5uk4:S, 5uk4:T, 5uk4:K, 5uk4:L, 5uk4:B, 5uk4:C, 5uk4:D, 5uk4:E, 5uk4:F, 5uk4:G, 5uk4:H, 5uk4:I, 5uk4:J, 5uk4:A, 5ukb:D, 5ukb:C, 5ukb:B, 5ukb:A, 5ukb:E, 7umk:A, 7uws:A, 7uws:B, 7uws:C, 7uws:D, 7uws:F, 2wyy:A, 2wyy:C, 2wyy:D, 2wyy:F, 2wyy:H, 2wyy:I, 2wyy:J, 2wyy:K, 2wyy:L, 2wyy:M
3 7uws:G 382 31 0.1556 0.0366 0.4516 0.52 7uml:A
4 6a4r:A 235 61 0.2222 0.0851 0.3279 2.2 6a4r:B
5 4dxl:A 304 42 0.1778 0.0526 0.3810 5.4 4ed4:A, 4emd:A
6 4ohf:B 458 26 0.1222 0.0240 0.4231 5.9 4ohf:A, 4ohf:C, 4ohf:D
7 6eri:AZ 66 22 0.0889 0.1212 0.3636 7.3 5mmi:0, 5mmm:0, 5x8p:0, 5x8t:0
8 6wby:A 1250 31 0.1556 0.0112 0.4516 7.3
9 6w98:A 1312 31 0.1556 0.0107 0.4516 7.3 6wbx:A
10 7brn:A 133 23 0.1222 0.0827 0.4783 7.5 3vxw:A, 6wy6:A, 6wy6:B, 2zpn:A, 2zpn:D, 2zpn:B, 2zpn:C
11 3naz:C 613 25 0.1222 0.0179 0.4400 7.8 3naz:D, 3o3c:A, 3o3c:B, 3o3c:C, 3o3c:D, 3rsz:C, 3rsz:D, 3rsz:A, 3rsz:B
12 3nb0:C 646 25 0.1222 0.0170 0.4400 7.8 4kq1:A, 4kq1:B, 4kq1:C, 4kq1:D, 4kq2:A, 4kq2:B, 4kq2:C, 4kq2:D, 4kqm:A, 4kqm:B, 4kqm:C, 4kqm:D, 3nb0:A, 3nb0:B, 3nb0:D, 3rt1:A, 3rt1:C, 3rt1:D, 3rt1:B, 5suk:A, 5suk:B, 5suk:C, 5suk:D, 5sul:A, 5sul:B, 6u77:A, 6u77:B, 6u77:C, 6u77:D, 5uw0:A, 5uw0:B, 5uw0:C, 5uw0:D, 5uw1:A, 5uw1:B, 5uw1:C, 5uw1:D, 5uw4:C, 5uw4:B, 5uw4:A, 5uw4:D, 5ux7:A, 5ux7:B, 5ux7:C, 5ux7:D, 5vnc:A, 5vnc:B, 5vnc:C, 5vnc:D
13 7sol:A 1011 27 0.1222 0.0109 0.4074 7.8 7pvn:A
14 7pvn:B 990 27 0.1222 0.0111 0.4074 7.9 7sol:C
15 8sli:A 894 35 0.1000 0.0101 0.2571 8.3 8sli:D, 8sli:C, 8sli:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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