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BioLiP
>protein
MKEAFKEALARFASGVTVVAARLGEEERGMTATAFMSLSLEPPLVALAVSERAKLLPVLEGAGAFTVSLLREGQEAVSEH
FAGRPKEGIALEEGRVKGALAVLRCRLHALYPGGDHRIVVGLVEEVELGEGGPPLVYFQRGYRRLVWPS

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ed4:A 149 149 1.0000 1.0000 1.0000 5.14e-102 2ed4:B
2 4l82:B 167 150 0.3289 0.2934 0.3267 4.04e-28 4l82:A
3 1rz0:A 153 147 0.3423 0.3333 0.3469 6.15e-27 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
4 3pft:B 157 150 0.3356 0.3185 0.3333 1.41e-20 3pft:A
5 5zyr:A 306 148 0.3423 0.1667 0.3446 1.79e-19 5zc2:B, 5zc2:A, 5zyr:B
6 4r82:A 166 107 0.2953 0.2651 0.4112 2.31e-16 4r82:B
7 4f07:F 155 148 0.3087 0.2968 0.3108 4.66e-16 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
8 4xj2:A 162 141 0.3490 0.3210 0.3688 7.48e-15
9 3rh7:A 292 149 0.3289 0.1678 0.3289 2.98e-14 3rh7:C, 3rh7:D, 3rh7:F
10 8ct0:H 178 164 0.3624 0.3034 0.3293 6.33e-14 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
11 2d38:A 156 156 0.3289 0.3141 0.3141 3.75e-13 2d36:A, 2d37:A
12 5cho:A 165 134 0.2886 0.2606 0.3209 1.87e-11 5cho:C, 5cho:B, 5cho:D, 5cho:E, 5cho:F, 5cho:G, 5cho:H
13 3k87:A 164 151 0.2685 0.2439 0.2649 8.58e-11 3k87:B, 3k88:A, 3k88:B
14 3cb0:A 166 156 0.2483 0.2229 0.2372 4.65e-09 3cb0:B, 4ira:A
15 1yoa:A 159 152 0.2953 0.2767 0.2895 3.09e-08
16 2r6v:A 182 112 0.2013 0.1648 0.2679 0.074 3zoc:A, 3zod:A, 3zog:A
17 1usc:A 178 126 0.2349 0.1966 0.2778 1.3 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
18 5fql:A 507 65 0.1342 0.0394 0.3077 1.6 6ioz:A
19 1eje:A 192 116 0.1812 0.1406 0.2328 4.4
20 7k15:A 455 66 0.1745 0.0571 0.3939 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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