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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MKAFEFLYEDFQRGLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEY
AYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA
GADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLR
RGLRGDTFGKV

The query sequence (length=251) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1qwg:A 251 251 1.0000 1.0000 1.0000 0.0
2 2hk1:A 289 75 0.0916 0.0796 0.3067 0.020 2hk1:B, 2hk1:C, 2hk1:D
3 6imc:D 340 101 0.0876 0.0647 0.2178 0.076 6imc:A, 6imc:B, 6imc:C, 6ksf:A, 6l94:A
4 2p1r:A 290 73 0.0717 0.0621 0.2466 0.38 2p1r:B, 2p1r:C, 2p1r:D
5 7jid:A 287 70 0.0876 0.0767 0.3143 2.4 7jid:B
6 7ehq:A 406 64 0.0797 0.0493 0.3125 2.6 7ehu:A
7 4q5n:A 220 72 0.0956 0.1091 0.3333 4.2 4q5n:B
8 1xc4:A 240 49 0.0677 0.0708 0.3469 4.5 1xc4:B
9 5mcp:F 342 110 0.1235 0.0906 0.2818 5.0
10 4hea:1 437 87 0.0916 0.0526 0.2644 5.6 2fug:1, 2fug:A, 2fug:J, 2fug:S, 4hea:B, 6i0d:1, 6i0d:B, 6i1p:1, 6i1p:B, 3i9v:1, 3i9v:A, 3iam:1, 3iam:A, 3ias:1, 3ias:A, 3ias:J, 3ias:S, 3m9s:1, 3m9s:A, 6q8o:1, 6q8o:B, 6q8w:1, 6q8w:B, 6q8x:1, 6q8x:B, 6y11:1, 6y11:B, 2ybb:1, 6ziy:1, 6zjl:1, 6zjn:1, 6zjy:1
11 7fa1:A 276 85 0.0956 0.0870 0.2824 7.2
12 4q4k:A 351 23 0.0438 0.0313 0.4783 7.9 4q4k:B, 4qis:A, 4qis:B, 4qit:A, 4qit:B, 4qiu:A, 4qiu:B
13 2gg6:A 445 52 0.0598 0.0337 0.2885 9.1 2gga:A, 2ggd:A, 2pqb:A, 2pqc:A, 2pqd:A
14 1zt2:A 327 31 0.0478 0.0367 0.3871 9.1 5of3:A, 5of3:D, 5ofn:A, 1zt2:C
15 7t2r:B 425 45 0.0558 0.0329 0.3111 9.9 7t2r:G, 7t30:B, 7t30:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218