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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MIVGLGTDIAEIERVEKALARSGENFARRILTDSELEQFHASKQQGRFLAKRFAAKEAASKALGTGIAQGVTFHDFTISH
DKLGKPLLILSGQAAELASQLQVENIHLSISDERHYAMATVILER

The query sequence (length=125) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3qmn:E 127 125 1.0000 0.9843 1.0000 1.13e-87 3qmn:A, 3qmn:C, 3qmn:B, 3qmn:D, 3qmn:F, 3qmn:G, 3qmn:I, 3qmn:H, 3qmn:J, 3qmn:L, 3qmn:K, 3qmn:Q, 3qmn:M, 3qmn:N, 3qmn:O, 3qmn:P, 3qmn:R, 3qmn:S, 3qmn:U, 3qmn:T, 3qmn:V, 3qmn:W, 3qmn:X
2 5xuh:C 125 123 0.5440 0.5440 0.5528 2.20e-44 5vcb:c, 5vcb:B, 5vcb:M, 5vcb:U, 5vcb:S, 5xuh:B, 5xuh:A
3 1f7l:A 118 126 0.4320 0.4576 0.4286 3.57e-27
4 3hyk:A 117 126 0.4400 0.4701 0.4365 2.86e-24 3hyk:B, 3hyk:C
5 2qg8:A 137 120 0.3600 0.3285 0.3750 1.21e-22
6 5suv:A 126 125 0.4080 0.4048 0.4080 7.17e-21 5suv:B, 5suv:C
7 1fth:A 117 129 0.4160 0.4444 0.4031 1.19e-18 1fth:B, 1fth:C
8 7r49:B 121 127 0.4000 0.4132 0.3937 2.48e-17
9 5xuk:A 115 119 0.3200 0.3478 0.3361 1.55e-14
10 2jbz:A 124 123 0.3760 0.3790 0.3821 1.52e-10 2wdo:A, 2wds:A, 2wdy:A
11 3hqj:A 113 125 0.3520 0.3894 0.3520 3.20e-09
12 6ql9:D 1765 120 0.2560 0.0181 0.2667 5.51e-04 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
13 4wwh:A 329 59 0.1680 0.0638 0.3559 1.2 4wwh:B
14 4v4n:AA 216 50 0.1120 0.0648 0.2800 1.6 4v6u:BA
15 7lcc:A 1369 56 0.1520 0.0139 0.3393 1.9
16 3ffz:A 1246 33 0.1040 0.0104 0.3939 2.1 3d3x:A, 3d3x:B, 3ffz:B, 7ovw:AAA, 7ovw:BBB, 1t3a:A, 1t3a:B, 1t3c:A, 1t3c:B, 7uib:D, 7uib:A, 1zkw:A, 1zkw:B, 1zkx:A, 4zkt:A, 4zkt:C, 4zkt:E, 1zl6:A, 1zn3:A
17 5caw:C 315 43 0.1040 0.0413 0.3023 3.5 5caw:A
18 1s56:B 135 64 0.1360 0.1259 0.2656 4.8 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
19 7nfc:A 3562 67 0.1360 0.0048 0.2537 6.6 8bh3:S, 8bh3:A, 8bhv:A, 8bhv:F, 8bhy:A, 8bhy:S, 8bot:F, 8bot:S, 7nfc:F
20 3pih:A 836 33 0.1120 0.0167 0.4242 7.9
21 7uxa:A 230 46 0.1120 0.0609 0.3043 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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