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BioLiP
>protein
MIVDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAIDLARVKIAIGNVGPSNRDLKVKLDYLKVDLQRWAQLYGIPLVF
PANYNSRRMNIGFYYSGAEAQAAAYVNVVFNAVWGEGIAPDLESLPALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAA
IERKVFGVPTMFLGDEMWWGNDRLFMLESAMGRLCRQNADLSS

The query sequence (length=203) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2imd:A 203 203 1.0000 1.0000 1.0000 5.66e-152 2ime:A, 2imf:A
2 3fz5:C 192 189 0.2365 0.2500 0.2540 1.35e-09 3fz5:A, 3fz5:B
3 1r4w:A 221 209 0.2217 0.2036 0.2153 1.57e-06 1r4w:B, 1r4w:C, 1r4w:D
4 3rpn:A 220 208 0.2217 0.2045 0.2163 0.012 3rpn:B, 3rpn:C, 3rpn:F, 3rpn:D, 3rpn:E, 1yzx:A, 1yzx:B
5 8btd:Lh 116 74 0.1034 0.1810 0.2838 0.21 8br8:Lh, 8brm:Lh, 8bsi:Lh, 8bsj:Lh, 8btr:Lh, 8fru:g, 7pwg:g, 7pwo:g2
6 7ane:ag 557 31 0.0640 0.0233 0.4194 0.75
7 3fig:B 577 42 0.0985 0.0347 0.4762 1.2 3fig:A, 3hps:A, 3hps:B, 3hpz:A, 3hpz:B, 3hq1:A, 3hq1:B, 1sr9:A, 1sr9:B, 3u6w:A, 3u6w:B
8 3oeh:Y 201 44 0.0936 0.0945 0.4318 3.3 3fks:Y, 2hld:Y, 3oe7:Y, 3oee:Y
9 4n83:A 285 33 0.0591 0.0421 0.3636 3.9 4n83:B, 4n83:C, 4n83:D, 4n83:E, 4n83:F, 4n83:G, 4n83:H
10 7pua:DH 568 31 0.0542 0.0194 0.3548 5.0 6hiv:DH, 6hiw:DH, 6hiz:DH, 7pub:DH

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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