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BioLiP
>protein
MITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIK
MLFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTGDEAR

The query sequence (length=120) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1mww:C 120 120 1.0000 1.0000 1.0000 2.67e-87
2 4lho:A 131 106 0.2583 0.2366 0.2925 7.22e-06 4lho:B, 4lho:C, 4lho:D, 4lho:E, 3mlc:A, 3mlc:B, 3mlc:C, 3mlc:D, 3mlc:E
3 7ms8:A 146 92 0.1917 0.1575 0.2500 0.007 7ms1:A, 7ms3:A, 7ms9:A, 7ms9:B, 7ms9:H, 7ms9:I, 7ms9:K
4 207l:A 130 47 0.1250 0.1154 0.3191 1.7 208l:A, 1d6q:A, 1hnl:A, 1i22:A, 1i22:B, 1i22:C, 1i22:D, 3lhm:A, 5lsh:A, 1re2:A, 1rem:A, 1rez:A, 1ubz:A
5 4pfy:A 539 106 0.2167 0.0482 0.2453 2.0 4pft:A, 4pft:B, 4pfy:B
6 7vpp:A 904 32 0.1083 0.0144 0.4062 4.2 6buy:A, 6bv0:A, 6bv1:A, 6bv2:A, 6bv3:A, 6bv4:A, 4f5c:A, 4f5c:B, 4fke:A, 4fkh:A, 4fkk:A, 4hom:A, 5lds:D, 5lds:A, 5lds:B, 5lds:C, 5lg6:A, 5lg6:B, 4naq:A, 4nz8:A, 4ou3:A, 7vpp:C, 5z65:A
7 5lug:A 207 58 0.1083 0.0628 0.2241 9.3 5lug:D, 5lug:C, 5lug:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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