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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRKQRKSKLDPFKPYLQKRMLEDGVFNSEKLFF
EIRQQGYTGGKTILKDYMKPFRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYSRMKYAVFTTS
QDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGVVKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIM
DHFYVGTAFESIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSYLSYRKVHWDGSFSYKGEQWL
LSAEYAGKEILVKERLNGDIRLYFRGEEISHV

The query sequence (length=352) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q4d:D 373 352 1.0000 0.9437 1.0000 0.0 8b4h:A, 8b4h:B, 8b4h:C, 8b4h:D, 8q4d:A, 8q4d:B, 8q4d:C
2 7ut1:b 244 144 0.0966 0.1393 0.2361 0.046 7usf:D, 7usf:C, 7ut1:g, 7ut1:h, 7ut1:H, 7ut1:f, 7ut1:B, 7ut1:F, 7ut1:G
3 7usf:A 265 122 0.0909 0.1208 0.2623 0.16 5cz2:A, 5cz2:B, 5cz2:C, 5cz2:D, 5cz2:E, 5cz2:G, 5cz2:H, 5cz2:I, 5cz2:J, 5cz2:K, 5cz2:L, 3jca:A, 3jca:D, 3jca:E, 3jca:G, 3jca:C, 3jca:H, 3jca:B, 3jca:F, 7usf:B, 7ut1:a, 7ut1:d, 7ut1:e, 7ut1:A, 7ut1:D, 7ut1:E, 7ut1:C
4 6wqp:B 354 194 0.1080 0.1073 0.1959 0.66 6wqv:A, 6wqv:B, 6wqv:C, 6wqv:D
5 2r0q:C 193 31 0.0398 0.0725 0.4516 1.2 2r0q:D, 2r0q:E, 2r0q:F
6 7qv9:M 417 40 0.0483 0.0408 0.4250 1.8 8f1i:M, 8f1j:M, 8f1k:M, 7qwp:M, 7qxi:M, 8re4:M, 8rea:M
7 5v8c:A 272 27 0.0312 0.0404 0.4074 1.9
8 8reb:M 350 40 0.0483 0.0486 0.4250 2.0 8rec:M, 8red:M, 8ree:M
9 6gh6:M 315 40 0.0483 0.0540 0.4250 2.4
10 5nss:M 388 40 0.0483 0.0438 0.4250 3.0 6gfw:M, 6gh5:M, 5nsr:M
11 5d6j:A 630 49 0.0483 0.0270 0.3469 4.2 5ey8:A, 5ey8:B, 5ey8:C, 5ey8:D, 5ey8:E, 5ey8:F, 5ey8:G, 5ey8:H, 5icr:A, 5icr:B, 5icr:C, 5icr:D
12 6dv9:F 174 31 0.0369 0.0747 0.4194 5.7 6dvb:F, 6dvc:F, 6dvd:F, 6dve:F, 7rwi:F, 6tye:F, 6tyf:F
13 2fts:A 419 36 0.0341 0.0286 0.3333 7.0 5err:A, 5ers:A, 5ert:A, 5eru:A, 5erv:A, 6fgc:A, 6fgd:A, 6hsn:A, 6hso:A, 4pd1:A, 1t3e:B, 4tk1:A, 4tk1:B, 4tk2:B, 4tk2:A, 4tk3:B, 4tk3:A, 4tk4:B, 4tk4:A, 4u90:A, 4u91:A
14 6n9l:A 625 28 0.0341 0.0192 0.4286 7.9
15 2c1z:A 439 38 0.0369 0.0296 0.3421 8.0 2c1x:A, 2c9z:A
16 5i44:B 68 29 0.0284 0.1471 0.3448 8.9 5i44:A, 5i44:D, 5i44:E, 5i44:H, 5i44:J, 5i44:K, 5i44:G, 5i44:F, 5i44:I
17 3pih:A 836 28 0.0341 0.0144 0.4286 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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