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BioLiP
>protein
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKARNLLFAMVEIESEERWNAVASTDVCQRWWKYM
TDVMPANPDNSPVSSELQEVFYLP

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1x8d:A 104 104 1.0000 1.0000 1.0000 7.02e-76 1x8d:B, 1x8d:C, 1x8d:D
2 2qlw:B 108 102 0.4038 0.3889 0.4118 6.27e-28 2qlx:A, 2qlx:B
3 7byw:A 108 112 0.2981 0.2870 0.2768 8.85e-09 7byw:B
4 2rc9:A 287 96 0.2692 0.0976 0.2917 0.99 2rc7:A, 2rc7:B, 2rc8:A, 2rc8:B, 2rc9:B
5 6slr:B 81 32 0.1250 0.1605 0.4062 3.3 6slr:C, 4v2o:B, 4v2o:C
6 6ej7:A 706 55 0.1731 0.0255 0.3273 3.3 6ej8:A, 6ej9:A, 6eja:A, 6ejb:A, 6ejc:A, 6ejd:A, 6eje:A
7 7b9q:A 868 44 0.1058 0.0127 0.2500 4.3 7b9q:B
8 7b9p:A 899 44 0.1058 0.0122 0.2500 4.3
9 4s17:A 452 51 0.1538 0.0354 0.3137 6.2 4s17:B, 4s17:C, 4s17:D, 4s17:E, 4s17:F
10 4a05:A 360 28 0.0962 0.0278 0.3571 6.7
11 5csl:A 2050 36 0.1250 0.0063 0.3611 7.0
12 5uid:A 367 21 0.0865 0.0245 0.4286 7.2 5uid:D
13 5ee3:B 364 25 0.0769 0.0220 0.3200 8.0 5ee3:A, 5ee9:A
14 1tuv:A 103 40 0.1346 0.1359 0.3500 9.3
15 2ozg:A 388 47 0.1442 0.0387 0.3191 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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