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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MHKEKWSWTVKFGEGWYGKHGFRNPTSKLVNAIGLRKLQEYIDKVVDLAKYGYDKLLGGGNLRLPLVIKVAKATEKAKER
VKEIGGEIILTSSE

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hku:L15P 94 94 1.0000 1.0000 1.0000 2.09e-64 8hkv:L15P, 8hky:L15P, 8hkz:L15P, 8hl1:L15P, 8hl2:L15P, 8hl3:L15P, 8hl4:L15P, 8hl5:L15P
2 4v4n:AL 147 105 0.3830 0.2449 0.3429 5.03e-14 4v6u:BL
3 6skf:BO 148 104 0.3617 0.2297 0.3269 5.54e-11 6skg:BO, 6th6:BO
4 4v6w:Ca 149 113 0.3723 0.2349 0.3097 2.95e-07 6xu6:Ca, 6xu7:Ca, 6xu8:Ca
5 8p5d:LAA 147 76 0.2766 0.1769 0.3421 6.77e-07 8p60:LAA, 8p60:KAA, 7qca:LAA
6 8a3w:L 144 111 0.3298 0.2153 0.2793 7.08e-07 8a98:L, 6az3:L, 3jcs:L, 8ovj:L, 8rxh:LL, 8rxx:LL, 5t2a:Z
7 6zj3:La 151 102 0.3298 0.2053 0.3039 1.44e-06
8 8ova:Bb 144 99 0.2979 0.1944 0.2828 1.74e-06 8ove:Bb, 5t5h:b, 4v8m:Bb
9 5xxb:Z 145 110 0.3723 0.2414 0.3182 3.57e-06
10 6rm3:LAA 148 106 0.3298 0.2095 0.2925 1.31e-05
11 9bh5:Ca 144 99 0.3191 0.2083 0.3030 1.53e-05 9cai:Ca
12 7oya:a1 147 112 0.3085 0.1973 0.2589 2.26e-05 7oyb:a1
13 7r81:c1 148 49 0.2128 0.1351 0.4082 3.05e-05
14 8pv1:La 108 49 0.2128 0.1852 0.4082 3.26e-05 8pv2:La, 8pv3:La, 8pv4:La, 8pv5:La, 8pv6:La, 8pv7:La, 8pv8:La, 8pvk:La, 8pvl:La
15 3j79:O 147 102 0.3298 0.2109 0.3039 4.29e-05 3jbn:AO, 3jbo:AO, 3jbp:AO, 8tpu:AO, 5umd:O
16 7olc:La 148 49 0.2128 0.1351 0.4082 5.66e-05 7old:La, 8oo0:La, 7z3n:La, 7z3o:La
17 4v8p:BK 148 108 0.3511 0.2230 0.3056 5.90e-05 4v8p:CK, 4v8p:EK, 4v8p:GK
18 7a01:q2 147 112 0.3085 0.1973 0.2589 6.22e-05 8a3d:U, 5aj0:Aa, 8b5l:a, 8b6c:a, 9bdl:AL28, 9bdn:AL28, 9bdp:AL28, 7bhp:La, 8bhf:N1, 8bpo:Z2, 8btk:Ba, 7cpu:La, 7cpv:La, 4d5y:a, 4d67:a, 6d90:a, 6d9j:a, 9f1b:Ba, 9f1c:Ba, 9f1d:Ba, 7f5s:La, 8fl6:LK, 8fl7:LK, 8fl9:LK, 8fla:LK, 8flb:LK, 8flc:LK, 8fld:LK, 8fle:LK, 8flf:LK, 6frk:a, 6ftg:a, 6fti:a, 6ftj:a, 8g5y:La, 8g5z:La, 8g60:La, 8g61:La, 8g6j:La, 8glp:La, 6gz3:Aa, 6gz4:Aa, 6gz5:Aa, 6hcf:a3, 6hcj:a3, 6hcm:a3, 6hcq:a3, 8idt:L, 8idy:L, 8ifd:2U, 8ife:2U, 8ine:L, 8inf:L, 6ip5:2U, 6ip6:2U, 6ip8:2U, 8ir3:L, 3j7o:a, 3j7p:a, 3j7q:a, 3j7r:a, 3j92:a, 3jag:a, 3jah:a, 3jai:a, 3jaj:a, 3jan:a, 8jdj:f, 8jdk:f, 8jdl:f, 8jdm:f, 8k2c:La, 5lks:La, 6lqm:L, 6lsr:L, 6lss:L, 7ls1:U2, 7ls2:U2, 6lu8:L, 5lzs:a, 5lzt:a, 5lzu:a, 5lzv:a, 5lzw:a, 5lzx:a, 5lzy:a, 5lzz:a, 7mdz:a, 6mtb:a, 6mtc:a, 6mtd:a, 6mte:a, 7nfx:a, 7nwg:a3, 7nwh:a, 7nwi:a, 7o7y:Ba, 7o7z:Ba, 7o80:Ba, 7o81:Ba, 7obr:a, 8ohd:La, 8oj0:La, 8oj5:La, 8oj8:La, 6ole:b, 6olf:b, 6olg:Aa, 6oli:b, 6olz:Aa, 6om0:b, 6om7:b, 7ow7:U, 7oyc:a1, 7oyd:a, 8p2k:Ba, 6p5i:Aa, 6p5j:Aa, 6p5k:Aa, 6p5n:Aa, 8q7z:Ba, 8q87:Ba, 8qfd:a, 7qgg:b, 8qoi:La, 7qvp:La, 7qvp:Ma, 7qwq:a, 7qwr:a, 7qws:a, 6qzp:La, 6r5q:a, 6r6g:a, 6r6p:a, 6r7q:a, 8rjb:a, 8rjc:a, 8rjd:a, 8scb:a, 6sgc:a2, 6swa:Y, 5t2c:U, 6t59:a3, 7tm3:a, 7toq:AL28, 7tor:AL28, 7tut:a, 7ucj:a, 7uck:a, 4ug0:La, 4ujc:Ba, 4ujd:Aa, 4uje:Ca, 4v6x:Ca, 6w6l:b, 6xa1:La, 7xnx:La, 7xny:La, 8xsx:La, 8xsy:La, 8xsz:La, 6y0g:La, 8y0w:La, 8y0x:La, 6y2l:La, 6y57:La, 6y6x:La, 8yoo:La, 8yop:La, 6z6l:La, 6z6m:La, 6z6n:La, 7zjw:Ld, 7zjx:Ld, 6zm7:La, 6zme:La, 6zmi:La, 6zmo:La, 6zvk:q2
19 8fl2:LK 117 49 0.1702 0.1368 0.3265 7.62e-05 8fkp:LK, 8fkq:LK, 8fkr:LK, 8fks:LK, 8fkt:LK, 8fku:LK, 8fkv:LK, 8fkw:LK, 8fkx:LK, 8fky:LK, 8fkz:LK, 8fl3:LK, 8fl4:LK, 8ink:L, 8ipd:L, 8ipx:L, 8ipy:L, 8ir1:L
20 8ie3:L 131 49 0.1702 0.1221 0.3265 8.50e-05
21 4v5z:Bl 122 50 0.1702 0.1311 0.3200 8.97e-05
22 4v3p:LO 144 109 0.3191 0.2083 0.2752 9.30e-05 4v7e:Ca
23 8azw:f 147 113 0.3723 0.2381 0.3097 1.01e-04 8b2l:f3
24 7qiw:c 147 115 0.3936 0.2517 0.3217 1.14e-04 7qiz:c
25 8br8:Lb 148 103 0.2979 0.1892 0.2718 1.53e-04 8brm:Lb, 8bsi:Lb, 8bsj:Lb, 8btd:Lb, 8btr:Lb, 8fru:a, 7pwg:a, 7pwo:a2
26 7qep:N8 146 104 0.2979 0.1918 0.2692 2.16e-04
27 8ip8:IA 144 49 0.1915 0.1250 0.3673 6.01e-04 8ipa:IA, 8ipb:IA, 8jiv:Ca
28 8c3a:AB 148 103 0.3085 0.1959 0.2816 7.86e-04 8c3a:BV, 8cq7:AB, 8cq7:BV, 8cqw:AB, 8cqw:BV, 8cre:AB, 8cre:BV, 8oeq:AB, 8oeq:BV, 7pzy:AB, 7q08:AB, 7q0f:AB, 7q0p:AB, 7q0r:AB, 8q5i:AB
29 6zu5:LAA 145 52 0.1702 0.1103 0.3077 0.006
30 8esr:a 97 52 0.1596 0.1546 0.2885 0.006 8etc:a, 8etg:a, 8etj:a
31 8eug:a 147 52 0.1596 0.1020 0.2885 0.007 8esq:a, 8eui:a
32 5xy3:a 149 103 0.2660 0.1678 0.2427 0.009
33 4v9f:L 149 96 0.2660 0.1678 0.2604 0.049 3cc2:L, 3cc4:L, 3cc7:L, 3cce:L, 3ccj:L, 3ccl:L, 3ccm:L, 3ccq:L, 3ccr:L, 3ccs:L, 3ccu:L, 3ccv:L, 3cd6:L, 3cma:L, 3cme:L, 3cpw:K, 3cxc:K, 1ffk:J, 3g4s:L, 3g6e:L, 3g71:L, 3i55:L, 3i56:L, 1jj2:K, 1k73:M, 1k8a:M, 1k9m:M, 1kc8:M, 1kd1:M, 1kqs:K, 1m1k:M, 1m90:M, 1n8r:M, 1nji:M, 2otj:L, 2otl:L, 3ow2:K, 1q7y:M, 1q81:M, 1q82:M, 1q86:M, 2qa4:L, 2qex:L, 1qvf:K, 1qvg:K, 1s72:L, 4v4p:AO, 4v4r:BP, 4v4s:BP, 4v4t:BP, 1vq4:L, 1vq5:L, 1vq6:L, 1vq7:L, 1vq8:L, 1vq9:L, 1vqk:L, 1vql:L, 1vqm:L, 1vqn:L, 1vqo:L, 1vqp:L, 1w2b:K, 1yhq:L, 1yi2:L, 1yij:L, 1yit:L, 1yj9:L, 1yjn:L, 1yjw:L
34 5it7:aa 147 101 0.2979 0.1905 0.2772 0.060 6uz7:Ba
35 4v6i:BO 149 49 0.1596 0.1007 0.3061 0.085 8aaf:N, 8agt:N, 8agu:N, 8agv:N, 8agw:N, 8agx:N, 8agz:N, 5apn:a, 5apo:a, 7azy:S, 7b7d:LW, 8bip:La, 8bjq:La, 8bn3:N8, 8bqd:AR, 8bqx:AR, 7bt6:a, 7btb:a, 8ccs:M, 8cdl:M, 8cdr:M, 8ceh:M, 8cf5:M, 8cg8:M, 8cgn:M, 8civ:M, 8cku:M, 8cmj:M, 5dat:N8, 5dat:n8, 5dc3:N8, 5dc3:n8, 5dge:N8, 5dge:n8, 5dgf:N8, 5dgf:n8, 5dgv:N8, 5dgv:n8, 6elz:a, 8eub:Aa, 8evp:Aa, 8evq:Aa, 8evr:Aa, 8evs:Aa, 8evt:Aa, 8ewb:Aa, 8ewc:Aa, 5fci:N8, 5fci:n8, 5fcj:N8, 5fcj:n8, 6ft6:a, 5gak:c, 6gq1:a, 6gqb:a, 6gqv:a, 5h4p:a, 6hd7:c, 8hfr:aw, 6hhq:AB, 6hhq:DC, 5i4l:N8, 5i4l:n8, 6i7o:AR, 6i7o:XR, 3j6x:68, 3j6y:68, 3j77:78, 3j78:78, 3jct:a, 5jcs:a, 5juo:FA, 5jup:FA, 5jus:FA, 5jut:FA, 5juu:FA, 8k2d:La, 8k82:La, 5lyb:N8, 5lyb:n8, 5m1j:a5, 6m62:a, 5mc6:AR, 5mei:AB, 5mei:DC, 7mpi:Aa, 7mpj:Aa, 6n8j:a, 6n8k:a, 6n8l:a, 6n8m:n, 6n8n:n, 6n8o:n, 7n8b:Aa, 5ndg:N8, 5ndg:n8, 5ndv:N8, 5ndv:n8, 5ndw:N8, 5ndw:n8, 7nrc:Lc, 7nrd:Lc, 5obm:N8, 5obm:n8, 7of1:a, 7oh3:a, 7ohq:a, 7ohv:a, 6oig:a, 5on6:AB, 5on6:DC, 7osa:uL15, 7osm:uL15, 8p8m:RA, 8p8n:RA, 8p8u:RA, 8pfr:RA, 6q8y:AR, 6qik:N, 6qt0:N, 6qtz:N, 6r84:c, 6r86:c, 6r87:c, 6ri5:N, 7rr5:La, 6rzz:N, 6s05:N, 6s47:Ac, 6snt:ap, 6sv4:AR, 6sv4:XR, 6sv4:zR, 6t4q:La, 5t62:n, 5t6r:n, 6t7i:La, 6t7t:La, 6t83:ay, 6t83:L, 5tbw:AB, 5tbw:DC, 6tb3:AR, 5tga:N8, 5tga:n8, 5tgm:N8, 5tgm:n8, 6tnu:AR, 7too:AL28, 7top:AL28, 7u0h:a, 4u3m:N8, 4u3m:n8, 4u3n:N8, 4u3n:n8, 4u3u:N8, 4u3u:n8, 4u4n:N8, 4u4n:n8, 4u4o:N8, 4u4o:n8, 4u4q:N8, 4u4q:n8, 4u4r:N8, 4u4r:n8, 4u4u:N8, 4u4u:n8, 4u4y:N8, 4u4y:n8, 4u4z:N8, 4u4z:n8, 4u50:N8, 4u50:n8, 4u51:N8, 4u51:n8, 4u52:N8, 4u52:n8, 4u53:N8, 4u53:n8, 4u55:N8, 4u55:n8, 4u56:N8, 4u56:n8, 4u6f:N8, 4u6f:n8, 7ug6:a, 7uoo:a, 7uqb:a, 7uqz:a, 7v08:a, 4v4b:BV, 4v7f:N, 4v7h:BV, 4v7r:BY, 4v7r:DY, 4v88:Ba, 4v88:Da, 4v8t:a, 4v8y:Ba, 4v8z:Ba, 4v91:a, 6woo:a, 6xiq:a, 6xir:a, 8y0u:La, 6ylg:a, 6ylh:a, 6ylx:a, 6yly:a, 7z34:K, 6z6j:La, 6z6k:La, 7zpq:BZ, 7zrs:BZ, 7zs5:Bb, 7zuw:BZ, 7zux:EZ, 7zw0:Ld
36 6kfu:A 527 41 0.2021 0.0361 0.4634 0.23 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
37 1nf6:F 171 56 0.1809 0.0994 0.3036 0.48 1nf4:A, 1nf4:B, 1nf4:C, 1nf4:D, 1nf4:E, 1nf4:F, 1nf4:G, 1nf4:H, 1nf4:I, 1nf4:J, 1nf4:K, 1nf4:L, 1nf4:M, 1nf4:N, 1nf4:O, 1nf4:P, 1nf6:A, 1nf6:B, 1nf6:C, 1nf6:D, 1nf6:E, 1nf6:G, 1nf6:H, 1nf6:I, 1nf6:J, 1nf6:K, 1nf6:L, 1nf6:M, 1nf6:N, 1nf6:O, 1nf6:P, 1nfv:A, 1nfv:B, 1nfv:C, 1nfv:D, 1nfv:E, 1nfv:F, 1nfv:G, 1nfv:H, 1nfv:I, 1nfv:J, 1nfv:K, 1nfv:L, 1nfv:M, 1nfv:N, 1nfv:O, 1nfv:P
38 5nug:A 2920 54 0.1915 0.0062 0.3333 1.3 5nug:B
39 8c8z:L 118 86 0.2234 0.1780 0.2442 1.3 8c8y:L, 8c90:L, 8c91:L, 8c92:L, 8c94:L, 8c96:L, 6gc6:L, 6gc7:L
40 4o2w:A 365 60 0.2128 0.0548 0.3333 1.9 4o2w:B, 4o2w:D
41 8ptk:f 4502 54 0.1915 0.0040 0.3333 1.9 8ptk:e
42 7z8f:e 4579 54 0.1915 0.0039 0.3333 2.1 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
43 8hku:L18E 112 35 0.1277 0.1071 0.3429 3.4 8hkv:L18E, 8hky:L18E, 8hkz:L18E, 8hl1:L18E, 8hl2:L18E, 8hl3:L18E, 8hl4:L18E, 8hl5:L18E
44 8c3a:BK 176 37 0.1383 0.0739 0.3514 3.8 8c3a:x, 8cq7:x, 8cq7:BK, 8cqw:x, 8cqw:BK, 8cre:x, 8cre:BK, 8oeq:x, 8oeq:BK, 7pzy:x, 7q08:x, 7q0f:x, 7q0p:x, 7q0r:x, 8q5i:x
45 6z1p:Aq 273 46 0.1915 0.0659 0.3913 4.1
46 5mrc:9 202 33 0.0957 0.0446 0.2727 4.4 3j6b:9, 5mre:9, 5mrf:9
47 4wcx:A 454 44 0.1489 0.0308 0.3182 4.7 4wcx:C
48 7s9u:L 130 32 0.1489 0.1077 0.4375 8.2 6ppf:L, 6ppk:L, 7sae:L
49 8g3h:A 841 71 0.1915 0.0214 0.2535 9.2
50 7vrg:A 540 70 0.2021 0.0352 0.2714 9.6 5gqb:A, 6jmn:A, 7vrg:B
51 6skf:BR 120 34 0.1383 0.1083 0.3824 9.9 6skg:BR, 6th6:BR

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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