Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MGSVKVRFYNNNTLSETGVIYMRINVINTGNAPLDLSDLKLRYYYTIDSESEQRFNCDWSSIGAHNVTGSFGKVNPSRNG
ADTYVEIGFTKEAGMLQPGESVELNARFSKTDNTQYNKADDYSFNSHYYEYVDWDRITAYISGILKWGREP

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4b97:A 151 151 1.0000 1.0000 1.0000 2.93e-112
2 3zqw:A 153 148 0.4702 0.4641 0.4797 2.12e-50 3zu8:A, 3zuc:A
3 4jo5:A 170 159 0.4768 0.4235 0.4528 1.14e-42 4b9f:A, 4b9f:B, 1nbc:A, 1nbc:B
4 4b9p:A 166 163 0.4503 0.4096 0.4172 1.47e-40
5 6d5b:B 154 151 0.4371 0.4286 0.4371 4.39e-39 6d5b:A, 6d5b:C, 6d5b:D, 6d5b:E, 6d5b:F, 6d5b:G, 6d5b:H, 6d5b:I, 6d5b:J, 6d5b:K, 6d5b:L
6 6sl4:A 150 148 0.3841 0.3867 0.3919 1.08e-33 6sl4:B, 6sl4:C
7 1g43:A 160 158 0.3775 0.3563 0.3608 2.54e-33
8 2wo4:A 159 133 0.3709 0.3522 0.4211 4.68e-28 2wnx:A, 2wob:A, 2wob:C, 2wob:E
9 4b9c:A 150 153 0.3642 0.3667 0.3595 4.14e-21
10 3zqx:A 146 148 0.3113 0.3219 0.3176 8.67e-21
11 4b96:A 151 150 0.3046 0.3046 0.3067 2.07e-15
12 2xfg:B 172 50 0.1126 0.0988 0.3400 0.22
13 8u49:A 615 139 0.2252 0.0553 0.2446 0.89 8u4a:A, 8u4f:A
14 1kfq:A 571 76 0.1391 0.0368 0.2763 1.3 1kfi:A, 1kfi:B, 1kfq:B
15 6gh2:A 908 34 0.0795 0.0132 0.3529 2.3 6gh2:B, 6gh3:A, 6gh3:B
16 5xu6:C 379 40 0.0993 0.0396 0.3750 2.6 5xu6:A, 5xu6:B, 5xu6:D
17 4v2x:A 534 51 0.1060 0.0300 0.3137 4.2
18 7nit:D 1253 78 0.1589 0.0192 0.3077 5.5 5dmy:A, 5dmy:B, 5dmy:C, 7nit:A, 7nit:B, 7nit:C, 7nit:E, 7nit:F, 6qub:A, 6qub:B, 6quc:A, 6quc:B
19 5ya6:B 165 98 0.1722 0.1576 0.2653 6.7 5ya6:A
20 4rku:3 151 42 0.0927 0.0927 0.3333 7.9
21 2p0a:A 298 88 0.1656 0.0839 0.2841 8.1 2p0a:B
22 7eg3:E 194 45 0.1060 0.0825 0.3556 9.5 7eg2:A, 7eg2:B, 7eg2:C, 7eg2:D, 7eg2:E, 7eg2:F, 7eg2:G, 7eg2:H, 7eg2:I, 7eg2:J, 7eg2:K, 7eg2:L, 7eg2:M, 7eg2:N, 7eg2:O, 7eg2:P, 7eg3:A, 7eg3:B, 7eg3:C, 7eg3:D, 7eg3:F, 7eg3:G, 7eg3:H, 7eg3:I, 7eg3:J, 7eg3:K, 7eg3:L, 7eg3:M, 7eg3:N, 7eg3:O, 7eg3:P, 1ej3:A, 1ej3:B, 1sl8:A, 1uhh:A, 1uhh:B, 1uhi:A, 1uhi:B, 1uhj:A, 1uhj:B, 1uhk:A, 1uhk:B, 5zab:A, 5zab:B, 5zab:C, 5zab:D, 5zab:E, 5zab:F, 5zab:G, 5zab:H, 5zab:I, 5zab:J, 5zab:K, 5zab:L, 5zab:M, 5zab:N, 5zab:O, 5zab:P

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218