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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEV
ISAVDESVDKSLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVS

The query sequence (length=126) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4hf1:A 129 124 0.9683 0.9457 0.9839 1.07e-82 4chu:A, 4hf1:B, 4hf2:A, 4hf2:B
2 4chu:B 127 127 0.9365 0.9291 0.9291 3.81e-79
3 4cic:A 138 121 0.4048 0.3696 0.4215 8.83e-29 4cic:B
4 6hsd:A 166 68 0.2222 0.1687 0.4118 4.15e-09 6hsd:C, 6hsd:B, 6hsd:D, 6hse:A, 6hse:C, 6hse:B, 6hse:D, 6hsm:A, 6hsm:D, 6hsm:B, 6hsm:C, 6hsm:E, 6hsm:G, 6hsm:F, 6hsm:H, 6y42:A, 6y42:B, 6y45:A, 6y45:C, 6y45:B, 6y45:D
5 7b0c:A 144 85 0.1825 0.1597 0.2706 0.068 7b0c:B, 5n07:A
6 1xs9:A 129 109 0.2063 0.2016 0.2385 0.54 1bl0:A
7 3pju:A 249 68 0.1667 0.0843 0.3088 0.87 3pjt:A, 3pjt:B
8 6kia:C 367 38 0.0952 0.0327 0.3158 1.5
9 6g1o:A 486 50 0.1111 0.0288 0.2800 3.3
10 4mc5:C 497 79 0.1905 0.0483 0.3038 4.9 8gv7:A, 4k3x:B, 4k3x:D, 4k3x:F, 4mc5:A, 4mc5:B, 7wvg:A
11 3f8f:A 114 23 0.0873 0.0965 0.4783 5.2 6do0:A, 6do0:B, 3f8c:A, 3f8f:B, 6fuu:A, 7q34:A, 7q34:B, 7q34:C, 7qz6:A, 7qz6:B, 7qz7:A, 7qz7:B, 7qz8:A, 7qz8:B, 6r1l:A, 6vwe:A, 6vwe:B, 7xuq:A, 8zf1:A
12 3bwe:A 188 56 0.1429 0.0957 0.3214 5.3 6af5:A, 6af9:A, 6afa:A, 6afb:A, 6afc:A, 6afd:A, 6afe:A, 6aff:A, 6afg:A, 6afh:A, 6afi:A, 6afj:A, 6afl:A, 3bwe:C, 3bwe:D, 3bwe:E, 3bwe:F, 4mnt:A, 4n0m:A, 4p35:A, 4p36:A, 7pa2:AAA, 7pa3:AAA, 8ppw:A, 8pq0:A
13 6khn:A 490 86 0.1825 0.0469 0.2674 6.2 6khn:B, 6kho:A, 6kho:B, 6khp:A, 6khp:B
14 4eys:A 343 50 0.1349 0.0496 0.3400 6.5
15 1gy8:C 370 33 0.0873 0.0297 0.3333 7.8 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
16 6cce:D 1195 95 0.1667 0.0176 0.2211 8.4
17 5x7m:A 443 44 0.1032 0.0293 0.2955 8.7 5x7m:B, 5x7n:A, 5x7n:B
18 6vvt:D 1200 99 0.1905 0.0200 0.2424 8.8
19 6z11:D 1254 56 0.1349 0.0136 0.3036 9.1 6ccv:D, 6eyd:D, 6f6w:D, 5tw1:D, 5vi5:D, 5vi8:D, 6vvs:D
20 6dcf:D 1176 56 0.1349 0.0145 0.3036 9.5 6vvv:D
21 8ej3:D 1281 56 0.1349 0.0133 0.3036 10.0 6bzo:D, 6c04:D, 6c05:D, 6c06:D, 6dv9:D, 6dvb:D, 6dvc:D, 6dvd:D, 6dve:D, 8e74:D, 8e79:D, 8e82:D, 8e8m:D, 8e95:D, 6edt:D, 6ee8:D, 6eec:D, 8ehq:D, 8eoe:D, 8eof:D, 8eos:D, 8eot:D, 8exy:D, 6fbv:D, 8hih:D, 6jcx:D, 6jcy:D, 7kif:D, 7kim:D, 7kin:D, 6kon:D, 6koo:D, 6kop:D, 6koq:D, 6m7j:D, 7p5x:AD, 7pp4:d, 8q3i:D, 7q4u:D, 7q4u:J, 7q4u:P, 7q4u:W, 7q4u:CA, 7q4u:IA, 7q4u:OA, 7q4u:UA, 7q59:D, 7q59:d, 7rwi:D, 6tye:D, 6tyf:D, 6tyg:D, 7u22:D, 5uh5:D, 5uh6:D, 5uh8:D, 5uh9:D, 5uha:D, 5uhb:D, 5uhc:D, 5uhd:D, 5uhe:D, 5uhf:D, 5uhg:D, 6vvx:D, 6vvy:D, 6vvz:D, 6vw0:D, 6yxu:D, 6yys:D, 7z8q:d, 7zf2:D, 5zx2:D, 5zx3:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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