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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGLHRLIFLSCATDGLSYPDLRDIMAKSEVNNLRDGITGMLCYGNGMFLQTLEGDRQKVSETYARILKDPRHHSAEIVEF
KAIEERTFINWSMRLVQLGEMDSDTIRRLRLKYSPAATFQPRSMTAEQCFRFLKELYDMSQ

The query sequence (length=141) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8i98:F 143 141 1.0000 0.9860 1.0000 2.01e-105 8i98:A, 8i98:B, 8i98:C, 8i98:D, 8i98:E, 8i98:G, 8i98:H, 8i98:I, 8i98:J, 8i98:K, 8i98:L, 8i98:M, 8i98:N, 8i98:O, 8i98:P, 8i98:Q, 8i98:R, 8i98:S, 8i98:T, 1x0p:A, 1x0p:B, 1x0p:C, 1x0p:D, 1x0p:E, 1x0p:F, 1x0p:G, 1x0p:H, 1x0p:I, 1x0p:J
2 2hfo:A 150 143 0.4326 0.4067 0.4266 1.95e-38 2hfn:A, 2hfn:B, 2hfn:C, 2hfn:D, 2hfn:E, 2hfn:F, 2hfn:G, 2hfn:H, 2hfn:I, 2hfn:J, 2hfo:B, 2hfo:C, 2hfo:D, 2hfo:E, 2hfo:F, 2hfo:G, 2hfo:H, 2hfo:I, 2hfo:J, 3mzi:A, 3mzi:B, 3mzi:C, 3mzi:D, 3mzi:E, 3mzi:F
3 2byc:A 137 82 0.2482 0.2555 0.4268 5.62e-16 2byc:B
4 5m2a:A 346 101 0.2837 0.1156 0.3960 8.74e-16 5m27:A, 5m27:B, 5m2a:B, 5mbb:A, 5mbb:B, 5mbc:A, 5mbc:B, 5mbd:A, 5mbd:B, 5mbe:A, 5mbe:B, 5mbh:A, 5mbj:A, 5mbk:A, 5nby:A
5 2bun:A 121 93 0.2482 0.2893 0.3763 2.90e-15
6 4hh0:A 383 93 0.2482 0.0914 0.3763 1.03e-13 4hh0:B, 4hh1:A, 4hh1:B, 2iyg:A, 2iyg:B, 2iyi:A, 2iyi:B, 1yrx:A, 1yrx:B, 1yrx:C
7 6w6z:A 151 117 0.2695 0.2517 0.3248 1.73e-13 6w72:A, 6w72:B
8 4yut:A 351 112 0.2624 0.1054 0.3304 1.25e-11 8qfe:A, 8qff:A, 8qfg:A, 8qfh:A, 8qfi:A, 8qfj:A, 5x4t:A, 5x4u:A, 5x4v:A, 4yus:A, 4yut:B
9 3gfx:B 394 115 0.2270 0.0812 0.2783 1.60e-06 3gfx:A, 3gfz:A, 3gfz:B, 3gg0:A, 3gg0:B, 3gg1:A, 3gg1:B, 2kb2:A
10 3gfy:B 374 114 0.2270 0.0856 0.2807 1.90e-06 3gfy:A
11 4mlg:G 324 97 0.1915 0.0833 0.2784 1.3 4mlg:A, 4mlg:B, 4mlg:C, 4mlg:D, 4mlg:E, 4mlg:F, 4mlg:H, 4mlg:I, 4mlg:J, 4mlg:K, 4mlg:L
12 7vcf:F 402 54 0.1206 0.0423 0.3148 5.0 7xzi:9, 7xzj:9
13 5iu2:B 313 38 0.0922 0.0415 0.3421 6.7 5iu2:A, 4y83:A, 4y83:B, 4y83:C, 4y85:A, 4y85:B, 4y85:C
14 2oaa:B 248 95 0.1277 0.0726 0.1895 6.9 2oaa:A
15 3l22:A 429 24 0.0709 0.0233 0.4167 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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