Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MGDVKNFLYAWCGKRKMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEV
PAFG

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vyy:A 86 84 1.0000 0.9767 1.0000 6.00e-60 3vyy:B
2 5ztm:A 168 81 0.5476 0.2738 0.5679 8.31e-32 5ztm:B
3 3adi:A 71 59 0.2262 0.2676 0.3220 0.011
4 8dga:K 182 68 0.2024 0.0934 0.2500 0.015 8dg7:K
5 6sdw:A 177 58 0.2381 0.1130 0.3448 0.021 6htu:A, 6htu:B, 6htu:C, 6sdy:A
6 8dfv:K 253 60 0.1905 0.0632 0.2667 0.094 8dg5:K
7 9asp:C 92 58 0.2143 0.1957 0.3103 0.35
8 6v5b:C 217 68 0.2500 0.0968 0.3088 0.93 6v5b:B, 6v5c:C, 6v5c:B
9 9asp:B 250 70 0.2500 0.0840 0.3000 1.8 9asm:B, 9asn:B, 9asq:B
10 8dh6:a 534 36 0.1548 0.0243 0.3611 2.5 8e7s:K, 8e7s:k, 8ec0:K, 6giq:a, 6hu9:a, 6hu9:m, 6t0b:a, 6t0b:n, 6t15:a, 6ymx:a, 6ymy:a, 7z10:a
11 4okd:A 801 35 0.1667 0.0175 0.4000 4.5 4okd:B
12 4g6z:A 380 24 0.0952 0.0211 0.3333 5.7
13 6tvk:AAA 660 22 0.1190 0.0152 0.4545 5.8
14 3x1l:B 319 33 0.1310 0.0345 0.3333 6.5
15 7aoi:AF 442 38 0.1310 0.0249 0.2895 7.4 6hiv:AF, 6hix:AF, 6yxy:AF
16 5dv7:C 137 31 0.1310 0.0803 0.3548 9.5

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218