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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MGDILIVNAKDVDEMLKQVEILRRLGAKQIAVESSDWRILQEALKKGGDILIVNGGGMTITFRGDDLEALLKAAIEMIKQ
ALKFGATITLSLDGNDLNINITGVPEQVRKELAKEAERLAKEFGITVTRTGGGDVDEMLKQVEILRRLGAKQIAVESDDW
RILQEAL

The query sequence (length=167) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zv9:B 169 166 0.9880 0.9763 0.9940 2.61e-112 6wxp:A, 6wxp:B, 6wxp:C, 6wxp:D, 6wxp:E, 6zv9:A
2 6zv9:B 169 37 0.2156 0.2130 0.9730 2.80e-16 6wxp:A, 6wxp:B, 6wxp:C, 6wxp:D, 6wxp:E, 6zv9:A
3 6wxp:F 144 165 0.8623 1.0000 0.8727 3.51e-84
4 6wxp:F 144 34 0.1976 0.2292 0.9706 1.28e-14
5 4ney:B 173 72 0.2934 0.2832 0.6806 5.01e-24 4ney:A, 4nez:A
6 4ney:B 173 78 0.3054 0.2948 0.6538 8.39e-24 4ney:A, 4nez:A
7 2fcc:A 137 55 0.1138 0.1387 0.3455 0.73 2fcc:B, 1vas:A
8 7xdu:B 348 41 0.1018 0.0489 0.4146 1.4 7xdu:A
9 7qt1:C 452 51 0.1078 0.0398 0.3529 1.6 7qsv:A, 7qsv:B, 7qsv:C, 7qsv:D, 7qsv:E, 7qsv:F, 7qsv:G, 7qsv:H, 7qsx:A, 7qsx:F, 7qsx:B, 7qsx:E, 7qsx:C, 7qsx:D, 7qsx:G, 7qsx:H, 7qsy:A, 7qsy:C, 7qsy:E, 7qsy:G, 7qsz:A, 7qsz:B, 7qsz:C, 7qsz:D, 7qt1:A, 7qt1:E, 7qt1:G, 7qvi:A, 7qvi:B, 7qvi:C, 7qvi:D, 7qvi:E, 7qvi:F, 7qvi:G, 7qvi:H, 7qvi:I, 7qvi:J, 7qvi:K, 7qvi:L, 7qvi:M, 7qvi:N, 7qvi:O, 7qvi:P
10 7r39:A 412 33 0.0898 0.0364 0.4545 2.8 7r39:B, 7r39:C, 7r39:D, 7r39:E, 7r39:F, 7r39:G, 7r39:H
11 3r5x:C 284 116 0.2156 0.1268 0.3103 3.8
12 5xsv:A 486 69 0.0898 0.0309 0.2174 3.9 5xsv:C, 5xsv:B, 5xsv:D
13 4wut:A 290 51 0.0958 0.0552 0.3137 4.0
14 3ibg:A 300 46 0.1018 0.0567 0.3696 4.1 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
15 6n4n:F 191 40 0.1198 0.1047 0.5000 4.1 6n4n:C
16 8uua:G 177 54 0.1018 0.0960 0.3148 4.4 8a57:K, 8a5i:K, 8a63:K, 7nhn:K, 8uu4:G, 8uu5:G, 8uu6:G, 8uu7:G, 8uu8:G, 8uu9:G
17 7rcz:A 511 48 0.0898 0.0294 0.3125 6.2 7rcz:B
18 2yce:E 255 89 0.1497 0.0980 0.2809 6.5 1w8s:A, 1w8s:B, 1w8s:C, 1w8s:D, 1w8s:E, 1w8s:F, 1w8s:G, 1w8s:H, 1w8s:I, 1w8s:J, 2yce:A, 2yce:B, 2yce:C, 2yce:D, 2yce:F, 2yce:G, 2yce:H, 2yce:I, 2yce:J
19 1xzq:A 449 64 0.1138 0.0423 0.2969 6.7 1xzq:B
20 2i9p:B 296 68 0.1198 0.0676 0.2941 7.9 2i9p:A, 2i9p:C, 2i9p:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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