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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFSKFFIERPIFASVVAIIISIAGIIGLANLPVEQYPSLTPPTVQVSATYTGADAQTIASTVATPIEDAINGVDNMIYMD
STSSPGQMKLTVYFNIGTDPDQAAIDVNNRISAATAKLPEAVKKLGVTVRKSSSTILEVVSVYSEDSSMNDIDIYNYVSL
NILDELKRIPGVGDASAIGNKNYSMRIWLEPDLLNKFGVTANDVINAVNDQNAQYATGKIGEEPVVNKSPQVISITMQGR
LQTPQEFENIILRVNEDKSFLRIKDVAKVEIGAEQYNSTGRLNTSAAVPIIINLQSGANAVNTAKLINEKMQELSKNFPQ
GLKYQIPYDTTIFVKASIKEVIKTFVEALALVLVVMYLFLKNFKSTIIPMIAVPVSLLGTFAVLYVLGFSINLLTLFALV
LAIGIVVDDAIIVVENIDRILHEDSNISVKDAAIKAMNEVSSPVISIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISV
AISGFVALTLTPSLSALFLTRNESKPFYFIQKFNDFFDWSTSVFSSGVAYILKRTIRFVLVFCIMIGFIAYLFKIVPSSL
VPSEDQGVIMSIINLPSGSSIHRTIEEVDTINKNATQMKEISSSVSLIGFDLFTSSLKENAAAVFFILKDWSQREASSDQ
IIAQLFGQYAADRNALSYFLNLPPIPGLSLTGGFEMYAQNKSGKDYDAIQQDVNKMLELARTRKELANVRTTLDTSFPQY
KLIIDRDKMKYYNLNMQDVFNTISATIGTYYVNDFPMLGKNFQVNIRALGDFRNTQDALKNIYIRSSDNKMIPLNSFLTL
VRSAGPDDVKRFNLFPAALIQGDPAPGYTSGQAIDAIAEVAKQSLGDEYSIAWSGSAYQEVSSKGAGAYAFVLGMIFVFL
ILAAQYERWLMPLAVITAVPFAVFGSILLVALRGFDNDIYFQTGLLLLIGLSAKNAILIIEFAMEERLKKGKSIFEAAIN
AAKLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLD

The query sequence (length=1031) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gjk:C 1032 1031 1.0000 0.9990 1.0000 0.0 8gjl:C, 8gk0:C, 8gk4:C
2 8f4r:B 1033 1035 0.4316 0.4308 0.4300 0.0
3 6iia:B 1030 1033 0.4229 0.4233 0.4221 0.0 6iia:E, 3w9j:B, 3w9j:E
4 4zjl:A 1044 1023 0.4113 0.4061 0.4145 0.0 3aob:C, 3aoc:C, 3aod:A, 3aod:C, 9bfh:A, 9bfm:A, 9bfn:A, 9bft:A, 2dr6:A, 2drd:A, 4dx5:B, 4dx7:A, 4dx7:B, 8ffs:A, 5jmn:A, 5jmn:B, 5jmn:C, 5nc5:B, 5ng5:K, 5ng5:L, 5ng5:J, 7ouk:A, 7ouk:B, 7ouk:C, 7oul:A, 7oul:C, 7oum:A, 7oum:B, 7oum:C, 8p1i:A, 8p1i:B, 6q4n:A, 6q4n:B, 6q4n:C, 6q4o:B, 2rdd:A, 1t9u:A, 1t9v:A, 1t9w:A, 1t9x:A, 1t9y:A, 4u8v:B, 4u8y:B, 4u95:B, 2w1b:A, 3w9h:B, 4zjl:D, 4zjo:A, 4zjo:D, 4zjq:A, 4zjq:D, 6zo5:B, 6zo5:C, 6zo6:B, 6zo6:C, 6zo7:A, 6zo7:B, 6zo8:B, 6zo8:C, 6zo9:B, 6zob:A, 6zoc:A, 6zoc:B, 6zod:A, 6zod:B, 6zof:B, 6zog:B, 6zoh:A, 6zoh:B, 6zoh:C
5 7ry3:C 1048 1048 0.3967 0.3903 0.3903 0.0 7m4p:B
6 7kgg:C 1020 1016 0.3851 0.3892 0.3907 0.0 7kgh:C, 7kgi:A, 7kgi:C
7 8dev:B 1043 1048 0.3957 0.3912 0.3893 0.0 8deu:B, 8dew:B, 6vks:B, 6vkt:B
8 7b8s:C 589 295 0.1242 0.2173 0.4339 2.58e-67 7b8r:C, 7b8t:C, 5eno:C, 5enp:C, 5enq:C, 5enr:C, 5ens:C, 5ent:C
9 7b8s:C 589 323 0.0854 0.1494 0.2724 2.77e-31 7b8r:C, 7b8t:C, 5eno:C, 5enp:C, 5enq:C, 5enr:C, 5ens:C, 5ent:C
10 4dnr:A 1031 1051 0.2493 0.2493 0.2445 1.15e-61 3k0i:A, 7kf6:A, 7kf6:B, 7kf6:C, 7kf7:B, 7kf8:B, 7kf8:C, 3t53:A
11 8qec:A 1101 227 0.0495 0.0463 0.2247 0.051 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
12 8qec:A 1101 101 0.0233 0.0218 0.2376 0.17 9f40:A, 9f40:D, 9f40:B, 9f40:C, 9f41:C, 9f41:D, 9f41:A, 9f41:B, 8qeb:A, 8qed:A, 8qee:A, 6r4l:A
13 6tbu:A 842 61 0.0223 0.0273 0.3770 0.073
14 7rpk:A 953 71 0.0213 0.0231 0.3099 0.29 7rph:A, 7rpi:A, 7rpj:A
15 7uoo:v 293 62 0.0194 0.0683 0.3226 0.82 5a53:C, 7bt6:v, 7btb:v, 6ft6:v, 3jct:v, 6m62:v, 7oh3:v, 7ohq:v, 7oht:v, 7ug6:v, 7uqb:v, 7uqz:v, 7v08:v
16 6xe6:A 826 71 0.0213 0.0266 0.3099 1.1
17 6wth:A 381 165 0.0407 0.1102 0.2545 3.4
18 8qnd:A 297 53 0.0165 0.0572 0.3208 4.6 8qnd:C, 8qnd:B, 8qnd:D
19 7rd6:A 929 79 0.0262 0.0291 0.3418 5.6 7rd7:A, 7rd8:A
20 4pdd:A 303 95 0.0223 0.0759 0.2421 8.2 4pdd:B, 4pdd:C
21 3a04:A 367 63 0.0175 0.0490 0.2857 8.8 3a05:A
22 5mgy:H 316 71 0.0155 0.0506 0.2254 8.9 5mgy:B, 5mgy:G, 5mgy:A, 5mgy:C, 5mgy:D, 5mgy:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218