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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFAF
TTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMRPGNRSLNLSNTVAVVVFEAWRQAGFEGGA

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4kgn:C 157 156 1.0000 0.9936 1.0000 1.94e-113 4kgn:E, 4kgn:G
2 4kgn:A 139 156 0.8910 1.0000 0.8910 4.76e-95
3 3n4k:A 163 158 0.5513 0.5276 0.5443 6.57e-64
4 4jal:A 156 154 0.5513 0.5513 0.5584 8.63e-63 4jal:B
5 1mxi:A 156 156 0.5321 0.5321 0.5321 5.86e-62
6 7e3q:B 159 155 0.5385 0.5283 0.5419 5.48e-58
7 5co4:B 161 149 0.4295 0.4161 0.4497 1.97e-36 5co4:A
8 4pzk:A 159 155 0.4295 0.4214 0.4323 5.17e-35 4pzk:B
9 8w9u:A 152 154 0.3846 0.3947 0.3896 4.35e-26 8w9u:B
10 4x3l:A 260 73 0.1731 0.1038 0.3699 3.38e-05 4x3l:B, 4x3m:A, 4x3m:B
11 7oi6:1 257 146 0.2372 0.1440 0.2534 2.90e-04 7oi6:z
12 1v2x:A 191 154 0.2692 0.2199 0.2727 4.51e-04
13 4cng:A 156 157 0.2436 0.2436 0.2420 0.006 4cnf:A, 4cng:B
14 5gm8:B 173 169 0.3077 0.2775 0.2840 0.12 5gm8:A, 5gm8:C, 5gm8:D
15 7ki9:A 166 103 0.1987 0.1867 0.3010 0.47 8f80:A, 8f81:A, 8f82:A, 8f83:A, 8f84:A, 8f85:A, 7k68:A, 7k69:A, 7k6a:A, 7ki8:A, 7km7:A, 7km8:A, 7km8:B, 7km9:A, 8ta0:A, 8ta1:A, 8tbr:A, 6uwq:A, 6uww:A
16 7edc:A 236 156 0.2372 0.1568 0.2372 0.61
17 6h5l:B 220 66 0.1026 0.0727 0.2424 2.1
18 6lsr:3 255 41 0.0833 0.0510 0.3171 2.5 6lqm:3, 6lu8:3
19 4gn7:A 297 74 0.1474 0.0774 0.3108 3.3 4gn7:B, 4gn8:A, 4gn8:B, 4gn9:A, 4gn9:B, 4gna:A, 4gna:B
20 8yla:A 328 85 0.1667 0.0793 0.3059 7.3 8yla:B
21 7am2:BU 463 103 0.1923 0.0648 0.2913 7.4
22 6h9s:B 292 83 0.1218 0.0651 0.2289 9.4 6h9s:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218