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BioLiP
>protein
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
NVYVTEVLADTVRFMDP

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vdy:A 101 100 0.9897 0.9505 0.9600 2.02e-66 3vdy:B
2 7dep:B 102 101 0.6082 0.5784 0.5842 6.49e-38
3 6bhx:C 102 105 0.6186 0.5882 0.5714 2.42e-37 6bhx:A, 6bhx:B
4 8gw5:A 99 105 0.5464 0.5354 0.5048 1.50e-31 7ym1:A
5 3a5u:A 118 81 0.3814 0.3136 0.4568 1.48e-16 3a5u:B
6 2vw9:A 108 108 0.4227 0.3796 0.3796 7.68e-16 2vw9:B
7 3udg:C 214 76 0.2990 0.1355 0.3816 1.32e-14 3udg:B, 3udg:A
8 3udg:C 214 31 0.1649 0.0748 0.5161 7.56e-04 3udg:B, 3udg:A
9 1eqq:B 120 99 0.3814 0.3083 0.3737 4.66e-14 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
10 5odp:G 100 96 0.3505 0.3400 0.3542 1.07e-13 5odp:A
11 5odn:D 106 101 0.3505 0.3208 0.3366 6.68e-12 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
12 6irq:C 104 94 0.3299 0.3077 0.3404 1.58e-09 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
13 6rup:A 111 105 0.2887 0.2523 0.2667 1.23e-04 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
14 3ulp:C 116 83 0.2371 0.1983 0.2771 1.31e-04 3ulp:A, 3ulp:B, 3ulp:D
15 8uzt:B 100 96 0.2680 0.2600 0.2708 1.44e-04
16 7mq9:LM 2005 44 0.1443 0.0070 0.3182 1.5
17 7mqa:LM 2041 44 0.1443 0.0069 0.3182 1.5
18 7dpt:A 556 34 0.1443 0.0252 0.4118 2.8 7dpt:B, 7dpt:C, 7dpt:D, 7dpw:A, 7dpw:B, 7dpw:C, 7dpw:D, 8i0h:A, 8i0i:A, 8i0i:C, 8i0i:D, 8i0i:E, 7wiz:A, 7wiz:B, 7wiz:C, 7wiz:D, 7wj4:D, 7wj4:A, 7wj4:B, 7wj4:C
19 6td7:A 126 48 0.1237 0.0952 0.2500 3.6
20 8wi0:A 1220 45 0.1649 0.0131 0.3556 3.9 8kci:A, 8wi2:A, 8wi5:A
21 2wta:A 212 29 0.1134 0.0519 0.3793 5.1 2wt9:A, 2wt9:B
22 2uyy:A 292 21 0.0928 0.0308 0.4286 6.0 2uyy:D
23 4m1e:B 273 38 0.1340 0.0476 0.3421 6.4 4m1e:A, 4m1e:F, 4m1e:E, 4m1e:C, 4m1e:D
24 1b25:A 611 34 0.1134 0.0180 0.3235 7.6 1b25:B, 1b25:C, 1b25:D, 1b4n:A, 1b4n:B, 1b4n:C, 1b4n:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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