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BioLiP
>protein
MEVNDLGFVASILFVLVPSVFLLILYIQTQSREGKE

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wql:MD 36 36 1.0000 1.0000 1.0000 6.45e-20 8wql:ME, 8wql:M1, 8wql:m1, 8wql:mD, 8wql:mE
2 3a0b:M 36 33 0.6667 0.6667 0.7273 1.27e-12 3a0b:m, 3a0h:M, 3a0h:m, 5b66:M, 7d1u:M, 7d1u:m, 7dxh:m, 8f4f:m, 6jln:M, 6jlo:M, 6jlp:M, 5mx2:m, 1s5l:M, 1s5l:m, 5tis:M, 5v2c:M
3 8tow:M 31 29 0.6667 0.7742 0.8276 1.54e-11 8tow:m
4 5xnl:M 33 33 0.5278 0.5758 0.5758 1.07e-08 7oui:M, 7oui:m, 5xnl:m, 5xnm:M, 5xnm:m
5 7ymi:M 31 30 0.5278 0.6129 0.6333 1.82e-08 7ymi:m, 7ymm:1M, 7ymm:2M, 7ymm:3M, 7ymm:4M
6 8bd3:m 57 32 0.5000 0.3158 0.5625 6.65e-08
7 7pi5:M 32 32 0.4722 0.5312 0.5312 2.28e-07 7pi5:m, 7pin:M, 7pin:m, 7pin:M1, 7pin:m1, 7piw:M, 7piw:m, 7piw:M1, 7piw:m1, 7pnk:M, 7pnk:m
8 6kac:M 30 29 0.4167 0.5000 0.5172 3.01e-05 6kac:m, 6kad:M, 6kad:m
9 4yuu:m2 40 32 0.4444 0.4000 0.5000 1.13e-04 4yuu:m1, 4yuu:M2
10 8wb4:M 36 35 0.4167 0.4167 0.4286 3.35e-04 8wb4:m
11 7y5e:ML 42 33 0.3889 0.3333 0.4242 0.002 7y5e:m6, 7y7a:M9, 7y7a:ME, 7y7a:mO, 7y7a:mZ, 7y7a:Mm
12 8xlp:m 38 35 0.3333 0.3158 0.3429 0.014
13 8j5k:M 41 32 0.3333 0.2927 0.3750 0.068 8j5k:m

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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