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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
METLHITKTMKNIEVPETKTASFECEVSHFNVPSMWLKNGVEIEMSEKFKIVVQGKLHQLIIMNTSTEDSAEYTFVCGND
QVSATLTVT

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jdj:B 91 89 1.0000 0.9780 1.0000 3.92e-62 5jdj:E, 5jdj:I, 5jdj:L, 4qeg:A
2 1waa:C 93 88 0.3034 0.2903 0.3068 3.75e-07 1waa:A, 1waa:B, 1waa:D, 1waa:E, 1waa:F
3 6h4l:A 96 89 0.3258 0.3021 0.3258 7.46e-04
4 6s9f:B 300 83 0.2247 0.0667 0.2410 0.85 6s9f:A
5 3pps:A 564 31 0.1573 0.0248 0.4516 1.2 3pps:B, 3pps:C, 3pps:D
6 1dyq:A 228 47 0.1910 0.0746 0.3617 1.8 1i4g:A, 1i4h:A, 1i4h:B, 1sxt:A, 1sxt:B
7 7ysw:C 213 33 0.1685 0.0704 0.4545 1.9 7ysw:E
8 5oyj:A 161 48 0.1573 0.0870 0.2917 1.9 5oyj:B
9 2kny:A 80 20 0.1011 0.1125 0.4500 2.3 2knx:A
10 7za1:E 251 58 0.2135 0.0757 0.3276 3.1 7za1:F, 7za1:H, 7za2:E, 7za2:G, 7za3:E, 7za3:G
11 3fu7:A 559 22 0.1236 0.0197 0.5000 3.4 3dkh:A, 3dkh:B, 3fu7:B, 3fu8:A, 3fu8:B, 3fu9:A, 3fu9:B, 1gw0:A, 1gw0:B, 2ih8:A, 2ih8:B, 2ih9:A, 2ih9:B, 2q9o:A, 2q9o:B, 3qpk:A, 3qpk:B
12 6tu9:A 267 67 0.2022 0.0674 0.2687 3.5 6tu9:B
13 7ok5:A 582 68 0.2584 0.0395 0.3382 6.1 7ok5:B
14 3p6b:A 186 50 0.1573 0.0753 0.2800 6.1 3p6b:B
15 1djs:A 206 20 0.1124 0.0485 0.5000 6.4 3cu1:C, 3cu1:A, 1e0o:B
16 7ysh:D 213 33 0.1685 0.0704 0.4545 7.0 1fq9:C, 1fq9:D, 7ysh:E
17 3ia8:A 162 33 0.1124 0.0617 0.3030 7.1 3ia8:B
18 5ijl:A 943 26 0.1236 0.0117 0.4231 7.3
19 8ppt:B 1191 26 0.1236 0.0092 0.4231 7.3 8ppu:B, 8ppv:B, 6t8h:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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