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BioLiP
>protein
MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAA
MSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKESES
ATVEAAIALTQAKIAPYAGLIMIMTMNNPKGGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR

The query sequence (length=229) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lp7:D 230 230 1.0000 0.9957 0.9957 1.41e-168 4lp7:A, 4lp7:B, 4lp7:C
2 7ovc:A 167 149 0.1528 0.2096 0.2349 2.7 7nw1:AAA, 7nw1:BBB
3 3u44:A 1122 123 0.1266 0.0258 0.2358 4.6 3u4q:A
4 8bos:G 320 57 0.0830 0.0594 0.3333 4.7 1wq1:G
5 6q2n:E 553 144 0.1528 0.0633 0.2431 4.7 6q2n:F
6 6q2o:E 572 147 0.1528 0.0612 0.2381 5.0 6q2j:E, 6q2j:F, 6q2o:F, 6q2r:E, 6q2r:F, 6q2r:Y, 6q2r:Z, 6q2s:E, 6q2s:F, 4ux8:A, 4ux8:B
7 6uxw:A 778 103 0.1266 0.0373 0.2816 9.6 7egp:A, 6iy2:O, 6iy3:O, 6uxv:A, 5x0x:O, 5x0y:O, 5z3l:O, 5z3o:O, 5z3u:O, 5z3v:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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