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BioLiP
>protein
MERAIQGNDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASL
HRVLGSWTGDSVNYAASRFLGANQVGCHYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTP

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bjv:A 148 148 0.9863 0.9730 0.9730 1.96e-104 6bjg:A, 6bjg:B, 6bjh:A, 6bjh:B, 6bjv:B, 4j39:A, 4j5v:A, 4jgn:A, 4jk0:D, 4jnx:A, 4jnx:D, 4knq:A, 4kq0:A, 4kq0:D, 4ktg:A, 1r9f:A, 1rpu:A, 1rpu:B
2 6d97:A 522 34 0.0959 0.0268 0.4118 0.031 6d97:B, 6d97:C, 6d97:D
3 5jcs:r 333 88 0.1438 0.0631 0.2386 1.1
4 6hnd:B 470 31 0.0822 0.0255 0.3871 2.4 6hnd:A, 6hnv:A, 6hnv:B
5 1e5q:A 449 13 0.0616 0.0200 0.6923 5.8 1e5q:B, 1e5q:C, 1e5q:D, 1e5q:E, 1e5q:F, 1e5q:G, 1e5q:H
6 5ta1:A 627 44 0.0959 0.0223 0.3182 6.5 5ta0:A, 5ta0:B, 5ta5:A, 5ta5:B
7 1uzr:B 288 38 0.0890 0.0451 0.3421 7.3 1uzr:A, 1uzr:C
8 3rdk:B 334 37 0.0890 0.0389 0.3514 8.9 4e4p:A, 4e4p:B, 3rdk:A, 3ro8:A, 3ro8:B, 3ro8:C, 3ro8:D, 3ro8:E, 3ro8:F, 3ro8:G, 3ro8:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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