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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MENFPTEYFLNTTVRLLEYIRYRDSNYTREERIENLHYAYNKAAHHFAQPRQQQLLKVDPKRLQASLQTIVGMVVYSWAK
VSKECMADLSIHYTYTLVLEDSKDDPYPTMVNYFDDLQAGREQAHPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEG
CWIEQYNFGGFPGSHDYPQFLRRMNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQ
ISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAVFSDKDPQVMDTIECFMHGYVTWHLCDRRYRLSEIYEKVKEEKTE
DAQKFCKFYEQAANVGAVSPSEWAYPPVAQLANV

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2aek:A 354 354 0.9944 0.9944 0.9944 0.0 2aek:B, 2ael:B, 2aet:B, 1jfg:B, 1kiz:B, 2ps4:A, 2ps4:B, 2ps5:B, 2ps7:A, 2ps7:B, 2ps8:B, 2q9y:B, 2q9z:B, 1yyq:B, 1yyr:A, 1yyr:B, 1yys:A, 1yys:B, 1yyt:A, 1yyt:B, 1yyu:A, 1yyu:B
2 8h4p:A 326 164 0.1186 0.1288 0.2561 9.52e-08 8h4p:B
3 1qlm:A 316 87 0.0650 0.0728 0.2644 0.19
4 3auy:A 366 90 0.0706 0.0683 0.2778 0.29 3aux:A, 3auy:B, 3av0:B, 5dny:D, 5dny:B, 5f3w:D, 5f3w:B
5 7kv7:BBB 258 34 0.0339 0.0465 0.3529 2.9 7kv6:AAA, 7kv7:AAA
6 7y9g:A 344 54 0.0395 0.0407 0.2593 6.3
7 4okm:A 346 168 0.1045 0.1069 0.2202 6.9 4okm:B, 4okm:C, 4okz:A, 4okz:B, 4okz:C, 4okz:D
8 7y9g:B 311 54 0.0395 0.0450 0.2593 7.0
9 1e3d:B 537 67 0.0508 0.0335 0.2687 7.8 1e3d:D
10 8btg:B 335 61 0.0452 0.0478 0.2623 9.2 8btg:A, 8btg:C, 8btg:D, 8btg:E, 8btg:F, 8btg:G, 8bv3:A, 8bv3:B, 8bv3:C, 8bv3:D, 8bv3:E
11 6i3d:B 218 36 0.0282 0.0459 0.2778 9.2 3a7e:A, 3bwm:A, 3bwy:A, 6i3c:A, 6i3d:A, 5lsa:A, 4pyj:A, 4pyk:A, 4xuc:A, 4xud:A, 4xue:B, 4xue:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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