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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEKENLIIAGKIGPEPEILANMYKLLIEENTSMTATVKPNFGTTSFLYEALKKGDIDIYPEFTGTVTESLLQPSPKVSHE
PEQVYQVARDGIAKQDHLAYLKPMSYQNTYAVAVPKKIAQEYGLKTISDLKKVEGQLKAGFTLEFNDREDGNKGLQSMYG
LNLNVATMQPALRYQAIHSGDIQITDAYSTDAELERYDLQVLEDDKQLFPPYQGAPLMKEALLKKHPELERVLNTLAGKI
TESQMSQLNYQVGVEGKSAKQVAKEFLQEQVC

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7txl:A 275 270 0.9926 0.9818 1.0000 0.0 7txk:A, 7txk:B, 7txl:B
2 7s7x:A 278 273 0.3787 0.3705 0.3773 1.41e-60 7s7x:B, 7s7x:C, 6v1r:A
3 3ppo:A 272 260 0.3603 0.3603 0.3769 1.54e-50 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
4 7s7t:A 509 197 0.2941 0.1572 0.4061 5.54e-48 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
5 7s7t:A 509 77 0.1029 0.0550 0.3636 0.001 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
6 6eyh:A 280 270 0.3493 0.3393 0.3519 1.85e-47 6eyl:A, 6eyl:B, 5nxy:A, 5nxy:C, 3r6u:A
7 1sw1:A 270 268 0.3529 0.3556 0.3582 4.28e-47 1sw1:B, 1sw4:A, 1sw4:B
8 8dp7:A 265 270 0.3419 0.3509 0.3444 2.48e-43 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
9 2pie:A 132 56 0.0662 0.1364 0.3214 2.5
10 5wcn:M 382 147 0.1250 0.0890 0.2313 4.3 5wcn:A, 5wd7:A
11 4o7p:B 451 50 0.0625 0.0377 0.3400 5.4
12 1f5o:A 149 40 0.0404 0.0738 0.2750 7.6 1f5o:B, 1f5o:C, 1f5o:D, 1f5o:E, 1f5o:F, 1f5p:A, 1f5p:B, 1f5p:C, 1f5p:D, 1f5p:E, 1f5p:F, 2lhb:A, 3lhb:A, 3lhb:B, 3lhb:C, 3lhb:D, 3lhb:E, 3lhb:F, 3lhb:G, 3lhb:H, 3lhb:I, 3lhb:J, 3lhb:K, 3lhb:L, 1uc3:A, 1uc3:B, 1uc3:C, 1uc3:D, 1uc3:E, 1uc3:F, 1uc3:G, 1uc3:H, 1uc3:I, 1uc3:J, 1uc3:K, 1uc3:L
13 7en7:A 191 49 0.0588 0.0838 0.3265 8.5 7en5:A, 7en6:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218