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BioLiP
>protein
MEIRKKLVVPSKYGTKCPYTMKPKYITVHNTYNDAPAENEVNYMITNNNEVSFHVAVDDKQAIQGIPWERNAWACGDGNG
PGNRESISVEICYSKSGGDRYYKAENNAVDVVRQLMSMYNIPIENVRTHQSWSGKYCPHRMLAEGRWGAFIQKVKSG

The query sequence (length=157) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2l47:A 165 157 0.9299 0.8848 0.9299 4.06e-111 2ar3:A, 2ar3:B, 2ar3:C, 1yb0:A, 1yb0:B, 1yb0:C
2 3hmb:B 156 146 0.3822 0.3846 0.4110 2.72e-31 3hmb:A, 3hmb:C, 3rdr:A
3 4knk:B 208 101 0.1847 0.1394 0.2871 1.19e-04 4knk:A, 4knl:C, 4knl:D
4 8c4d:A 184 133 0.2357 0.2011 0.2782 1.36e-04
5 4ols:A 185 140 0.2166 0.1838 0.2429 0.001 4ols:B, 4ols:C, 4ols:D
6 3jb9:c 300 41 0.1019 0.0533 0.3902 0.51
7 6fih:A 379 50 0.0892 0.0369 0.2800 1.0
8 3r7d:A 291 41 0.0955 0.0515 0.3659 2.7 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
9 6fiy:B 303 67 0.1338 0.0693 0.3134 3.7 6fiy:A, 6fks:A, 6fks:B, 6fkt:A, 6fkt:B, 6fl2:A, 6fl2:B, 6rpd:A, 6rpd:B, 6rpe:A, 6rpe:B, 6rqy:A, 6rqy:B, 6rr1:A, 6rr1:B, 6rr4:A, 6rr4:B, 6rr5:A, 6rr5:B, 6rr6:A, 6rr6:B, 6rr8:A, 6rr8:B
10 3ik2:A 512 64 0.1210 0.0371 0.2969 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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