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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGD
RSRAAAR

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d98:Q 288 87 1.0000 0.3021 1.0000 1.10e-55 7d98:A, 7d98:B, 7d98:P, 5xxp:A, 5xxp:B
2 4ihs:B 93 72 0.3793 0.3548 0.4583 9.87e-19 4ihs:A, 4ihs:C, 4ihs:D, 4iht:A, 4iht:B, 4iht:C, 4iht:D
3 3fxr:A 296 72 0.3333 0.0980 0.4028 8.71e-12 3fxu:A, 3fxu:B, 3n6u:A
4 6g4r:B 322 71 0.3333 0.0901 0.4085 2.15e-11 6g1b:J, 6g4r:E
5 8h3v:S 304 71 0.3563 0.1020 0.4366 2.35e-11 8h3v:T, 8h3v:U, 8h3v:V
6 9f14:A 324 74 0.2874 0.0772 0.3378 7.04e-08 9f14:B, 9fdd:A, 9fdd:B, 9fdd:C, 9fdd:D, 9fdd:E, 9fdd:F, 9fdd:G, 9fdd:H, 4lq2:A, 4lq5:A, 4m4g:A
7 5y2v:A 304 69 0.2644 0.0757 0.3333 7.51e-07 5y2v:B, 5y2v:C, 5y2v:D, 5y2w:A
8 4j1t:E 373 49 0.2069 0.0483 0.3673 0.47 4j16:A, 4j16:B, 4j1t:B, 4o9u:E, 4o9u:F
9 6thq:B 301 51 0.2299 0.0664 0.3922 1.1 5ce8:A, 5ce8:B, 5ce8:C, 6thq:A, 6thq:C
10 5rym:A 284 27 0.1264 0.0387 0.4074 1.9 3bin:A, 5ryn:A, 5ryo:A, 5ryp:A, 5ryq:A, 5ryr:A, 5rys:A, 5ryt:A, 5ryu:A, 5ryv:A, 5ryw:A, 5ryx:A, 5ryy:A, 5ryz:A, 5rz0:A, 5rz1:A, 5rz2:A, 5rz3:A, 5rz4:A, 5rz5:A, 5rz6:A, 5rz7:A, 5rz8:A, 5rz9:A, 5rza:A, 5rzb:A, 5rzc:A, 5rzd:A, 5rze:A, 5rzf:A, 5rzg:A, 5rzh:A, 5rzi:A, 5rzj:A, 5rzk:A, 5rzl:A, 5rzm:A, 5rzn:A, 5rzo:A, 5rzp:A, 5rzq:A, 5rzr:A, 5rzs:A, 5rzt:A, 5rzu:A, 5rzv:A, 5rzw:A, 5rzx:A, 5rzy:A, 5rzz:A, 5s00:A
11 6xdk:D 359 46 0.1839 0.0446 0.3478 4.2 6xdk:B, 6xdk:A, 6xdk:C
12 1wlj:A 168 30 0.1609 0.0833 0.4667 6.8
13 8a3l:T 86 30 0.1494 0.1512 0.4333 9.1 4a2i:T, 7abz:y, 7ac7:y, 7acj:y, 7acr:y, 4adv:T, 5afi:t, 7afi:T, 7afl:T, 7afo:T, 8akn:U, 8am9:U, 6awb:W, 6awc:W, 6awd:W, 9ax7:T, 9ax8:t, 8aye:T, 8b0x:T, 7b5k:t, 8b7y:y, 8bf7:x, 8bge:x, 8bgh:x, 8bh4:x, 8bhj:x, 8bhl:x, 8bhn:x, 8bhp:x, 8bil:x, 8bim:x, 7bod:T, 7boe:T, 7bof:T, 7bog:T, 7boh:T, 7boi:T, 6bu8:T, 6by1:AT, 6by1:BT, 6c4i:t, 8cai:T, 8cep:T, 8cgj:T, 8cgr:T, 8cgu:T, 9cg5:T, 9cg6:T, 9cg7:T, 7cpj:t, 7d6z:0, 7d80:U, 6dnc:GB, 8eiu:T, 8ekc:t, 8emm:T, 6enf:t, 6enj:t, 6enu:t, 8eyq:T, 8eyt:T, 9fbv:T, 8fiz:AB, 8fto:T, 8fzd:t, 8fze:t, 8fzf:t, 8fzg:t, 8fzh:t, 8fzi:t, 8fzj:t, 8g2u:s, 8g31:s, 8g34:s, 8g38:s, 8g6w:T, 8g7p:t, 8g7q:t, 8g7r:t, 8g7s:t, 8ghu:t, 6gwt:t, 6gxm:t, 6gxn:t, 6gxo:t, 6gxp:t, 6h4n:t, 5h5u:1, 6h58:t, 6h58:tt, 6hrm:y, 8hsp:T, 8htz:T, 8hu1:T, 6i7v:AT, 6i7v:BT, 8ifb:T, 8ifc:T, 5iqr:y, 5it8:AT, 5it8:BT, 5j5b:AT, 5j5b:BT, 5j7l:AT, 5j7l:BT, 5j88:AT, 5j88:BT, 5j8a:AT, 5j8a:BT, 3j9y:t, 3j9z:ST, 5j91:AT, 5j91:BT, 3ja1:ST, 3jbu:T, 3jbv:T, 3jcd:t, 3jce:t, 3jcj:3, 3jcn:x, 5jc9:AT, 5jc9:BT, 7jss:Y, 7jsw:Y, 7jsz:Y, 8jsg:3, 8jsh:3, 5jte:AT, 7jt1:Y, 7jt2:Y, 7jt3:Y, 5ju8:AT, 7k00:T, 8k3o:T, 8k4e:T, 7k50:Y, 7k51:Y, 7k52:Y, 7k53:Y, 7k54:Y, 7k55:Y, 5kcr:1t, 5kcs:1t, 5kps:25, 5kpv:24, 5kpw:24, 5kpx:24, 5l3p:t, 6lkq:S, 7lv0:Y, 5lza:t, 5lzb:t, 5lzc:t, 5lzd:t, 5lze:t, 5lzf:t, 7m5d:y, 5mdv:y, 5mdw:y, 5mdy:y, 5mdz:y, 5me0:T, 5me1:T, 5mgp:t, 5my1:T, 7n1p:ST, 7n2c:ST, 7n2u:ST, 7n2v:ST, 7n30:ST, 7n31:ST, 7nar:T, 7nas:T, 7nat:T, 7nau:T, 7nav:T, 7nax:T, 7nbu:T, 5no2:T, 5no3:T, 5no4:T, 5np6:W, 6nqb:T, 7nso:t, 7nsp:t, 7nsq:t, 5nwy:J, 7nwt:y, 7nww:x, 7o19:AT, 7o1a:AT, 7o1c:AT, 5o2r:t, 7o5h:T, 6o7k:3, 6o9j:t, 6o9k:t, 7oe0:T, 7oe1:T, 6ofx:Y, 6og7:Y, 6ogf:Y, 6ogg:Y, 6ogi:Y, 7oi0:T, 7oif:x, 7oig:x, 7oii:x, 7oiz:T, 7oj0:T, 6om6:y, 6ore:y, 6orl:y, 6osk:y, 6osq:y, 6ost:y, 6ot3:y, 7ot5:x, 7otc:t, 6ouo:y, 8p16:y, 8p17:y, 8p18:y, 7p3k:T, 8peg:T, 8phj:T, 7pjs:t, 7pjt:t, 7pju:t, 7pjv:t, 7pjw:t, 7pjx:t, 7pjy:t, 7pjz:t, 8pkl:T, 8pva:T, 7q4k:AT, 8q4f:T, 6q97:y, 6q98:y, 6q9a:y, 8qbt:2, 7qg8:u, 7qgh:K, 7qgn:u, 7qgr:K, 8qk7:y, 8qoa:T, 8r3v:T1, 8r6c:T, 8r8m:T, 8rcl:T1, 8rcm:T1, 8rcs:T1, 8rct:T1, 7s1g:2, 7s1h:2, 7s1i:2, 7s1j:2, 7s1k:2, 7sa4:y, 7ss9:Y, 7ssd:Y, 7ssl:Y, 7ssn:Y, 7sso:Y, 7ssw:Y, 7st2:Y, 7st6:Y, 7st7:Y, 8syl:t, 6szs:t, 8t5d:s, 8t5h:s, 6tbv:S201, 6tc3:S201, 7tos:S20, 4u1u:AT, 4u1u:CT, 4u1v:AT, 4u1v:CT, 4u20:AT, 4u20:CT, 4u24:AT, 4u24:CT, 4u25:AT, 4u25:CT, 4u26:AT, 4u26:CT, 4u27:AT, 4u27:CT, 5u4i:t, 5u9f:T, 5u9g:T, 7ug7:ST, 7uph:G, 8upo:E, 8upr:E, 8uql:E, 8uqm:E, 8uqp:E, 8ur0:E, 8urh:E, 8uri:E, 8urx:E, 8ury:E, 5uyk:T, 5uyl:T, 5uym:T, 5uyn:T, 5uyp:T, 5uyq:T, 5uz4:T, 4v4h:AT, 4v4h:CT, 4v4q:AT, 4v4q:CT, 4v4v:AT, 4v4w:AT, 4v50:AT, 4v50:CT, 4v52:AT, 4v52:CT, 4v53:AT, 4v53:CT, 4v54:AT, 4v54:CT, 4v55:AT, 4v55:CT, 4v56:AT, 4v56:CT, 4v57:AT, 4v57:CT, 4v5b:BT, 4v5b:DT, 4v5h:AT, 4v5y:AT, 4v5y:CT, 4v64:AT, 4v64:CT, 4v65:AN, 4v66:AN, 4v69:AT, 4v6c:AT, 4v6c:CT, 4v6d:AT, 4v6d:CT, 4v6e:AT, 4v6e:CT, 4v6k:BX, 4v6l:AX, 4v6m:AT, 4v6n:BW, 4v6o:AW, 4v6p:AW, 4v6q:AW, 4v6r:AW, 4v6s:BV, 4v6t:AT, 4v6v:AT, 4v6y:AT, 4v6z:AT, 4v70:AT, 4v71:AT, 4v72:AT, 4v73:AT, 4v74:AT, 4v75:AT, 4v76:AT, 4v77:AT, 4v78:AT, 4v79:AT, 4v7a:AT, 4v7b:AT, 4v7c:AT, 4v7d:BT, 4v7i:BT, 4v7s:AT, 4v7s:CT, 4v7t:AT, 4v7t:CT, 4v7u:AT, 4v7u:CT, 4v7v:AT, 4v7v:CT, 4v85:AT, 4v89:AT, 4v9c:AT, 4v9c:CT, 4v9d:AT, 4v9d:BT, 4v9o:BT, 4v9o:DT, 4v9o:FT, 4v9o:HT, 4v9p:BT, 4v9p:DT, 4v9p:FT, 4v9p:HT, 8vs9:S20, 8vsa:S20, 6vu3:E, 6vwl:s, 6vwm:s, 6vwn:s, 6vyq:E, 6vyr:E, 6vys:E, 6vyt:E, 6vyu:E, 6vyw:E, 6vyx:E, 6vyy:E, 6vyz:E, 6vz2:E, 6vz3:E, 6vz5:E, 6vz7:E, 6vzj:E, 6w6k:T, 6w77:T, 6w7m:T, 6w7n:T, 6w7w:S, 5wdt:t, 6wd0:Y, 6wd1:Y, 6wd2:Y, 6wd3:Y, 6wd4:Y, 6wd5:Y, 6wd6:Y, 6wd7:Y, 6wd8:Y, 6wd9:Y, 6wda:Y, 6wdb:Y, 6wdc:Y, 6wdd:Y, 6wde:Y, 6wdf:Y, 6wdg:Y, 6wdh:Y, 6wdi:Y, 6wdj:Y, 6wdk:Y, 6wdl:Y, 6wdm:Y, 5we4:t, 5we6:t, 4wf1:AT, 4wf1:CT, 5wf0:t, 5wfk:t, 5wfs:t, 6wnv:Y, 6wnw:Y, 4woi:AT, 4woi:DT, 4www:QT, 4www:XT, 6x6t:E, 6x7f:E, 6x7k:E, 6x9q:E, 6xdq:E, 6xdr:E, 6xe0:T, 6xgf:E, 6xii:E, 6xij:E, 6xza:T1, 6xzb:T1, 6y69:t, 7y7c:T, 7y7d:T, 7y7e:T, 7y7f:T, 7y7g:T, 7y7h:T, 4ybb:AT, 4ybb:BT, 2ykr:T, 6ysr:t, 6yss:t, 6yst:t, 6ysu:t, 6ztj:AT, 6ztl:AT, 6ztm:AT, 6ztn:AT, 6zto:AT, 6ztp:AT, 7zta:S201, 6zu1:AT
14 6czy:A 362 31 0.1264 0.0304 0.3548 9.5 6czy:B, 6czy:C, 6czy:D, 6czz:A, 6czz:B, 6czz:C, 6czz:D
15 8ewi:A 1775 49 0.2299 0.0113 0.4082 9.9 8ewi:B, 8ewi:C, 8ewi:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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