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BioLiP
>protein
MEEAKQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSGSTTMYGLKGAGKQAAAE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1ucr:B 75 75 1.0000 1.0000 1.0000 4.22e-51 1ucr:A
2 8bx8:C 3947 70 0.2667 0.0051 0.2857 0.25 7k58:C, 7k5b:C, 7kek:C
3 5tck:A 139 64 0.2267 0.1223 0.2656 2.1 5tck:B
4 6kr5:B 336 56 0.2267 0.0506 0.3036 2.6 6kr5:A
5 8snj:A 370 17 0.1200 0.0243 0.5294 4.7 8sng:A, 8sng:B, 8snj:B, 8snj:C, 8snj:D, 8snj:E, 8snj:F, 8su6:A, 8su6:B
6 1ogy:A 789 17 0.1333 0.0127 0.5882 4.8 1ogy:C, 1ogy:E, 1ogy:G, 1ogy:I, 1ogy:K, 1ogy:M, 1ogy:O
7 6rey:c 1773 47 0.1600 0.0068 0.2553 5.3 6rey:d
8 6kwy:c 1811 47 0.1600 0.0066 0.2553 5.3 8cvs:c, 6kwx:A, 7naq:c
9 3ml1:A 799 16 0.1333 0.0125 0.6250 5.4 3o5a:A
10 3d5i:B 97 44 0.1467 0.1134 0.2500 6.2 3d4a:B, 3dgy:A, 3dgy:B, 3dh2:A, 3dh2:B, 3dh2:C, 3dh2:D
11 4ei5:D 242 61 0.2267 0.0702 0.2787 8.1 4ei5:H, 4elm:H, 4elm:F
12 6ynv:e 417 31 0.1333 0.0240 0.3226 8.2 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3
13 1mdx:A 366 17 0.1067 0.0219 0.4706 8.3 1mdo:A, 1mdz:A, 4oca:A
14 7uio:Ag 171 17 0.1333 0.0585 0.5882 9.3 5sva:U, 7ui9:g, 7uif:g, 7uig:g, 7uio:Bg
15 8rsj:A 262 28 0.1733 0.0496 0.4643 9.6 8rsi:A, 8rsi:B, 8rsj:B, 8rsk:A, 8rsk:B, 8rsk:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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