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BioLiP
>protein
MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNAPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e6z:X 80 80 1.0000 1.0000 1.0000 9.31e-55 2qcp:X, 2vb2:X
2 8c2q:A 100 76 0.5250 0.4200 0.5526 2.34e-23 8bbz:CCC
3 8bwv:B 80 77 0.5125 0.5125 0.5325 1.41e-21 8bwv:A, 8bwv:C, 8bwv:D, 8bwv:E, 8bwv:F
4 6mg0:B 1687 41 0.1875 0.0089 0.3659 0.41
5 6mfz:A 1789 41 0.1875 0.0084 0.3659 0.43 5es7:A, 5es8:A, 5es8:B, 5es9:A, 6mfw:A, 6mfx:A, 6mfy:A, 6mg0:A, 6ulz:A
6 8fmw:AI 148 27 0.1250 0.0676 0.3704 0.79 8fn2:I
7 8ayh:B 951 26 0.1500 0.0126 0.4615 3.1 3frp:A, 3hrz:A, 3hs0:A, 3hs0:F
8 2g42:B 78 32 0.1250 0.1282 0.3125 7.1
9 6skz:A 2638 60 0.2000 0.0061 0.2667 7.7 6sl0:A, 6sl0:B
10 6sl1:A 2652 60 0.2000 0.0060 0.2667 7.7 6sky:A, 6sky:B
11 8qre:A 237 35 0.1500 0.0506 0.3429 9.4 2a5f:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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