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BioLiP
>protein
MEALIPVINKLQDVFNTVGADIIQLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTG
EENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPK
DIELQIRELILRFISNPNSIILAVTAANTDMATSEALKISREVDPDGRRTLAVITKLDLMDAGTDAMDVLMGRVIPVKLG
IIGVVNRSQLDINNKKSVTDSIRDEYAFLQKKYPSLANRNGTKYLARTLNRLLMHHIRDCLPELKTRINVLAAQYQSLLN
SYGEPVDGSGSGSGSKEAADMLKALQGASQIIAEIRET

The query sequence (length=358) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4h1v:A 358 358 1.0000 1.0000 1.0000 0.0
2 5wp9:A 590 355 0.8883 0.5390 0.8958 0.0 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
3 5wp9:A 590 148 0.1313 0.0797 0.3176 3.14e-07 8skn:A, 8skn:B, 3w6n:A, 3w6n:B, 3w6o:A, 3w6o:B, 3w6p:A, 3w6p:B, 5wp9:C, 5wp9:E, 5wp9:G, 5wp9:I, 5wp9:K, 5wp9:M, 5wp9:O
4 6def:C 368 357 0.5307 0.5163 0.5322 3.05e-132 6def:A, 6def:B, 6def:D, 6di7:A, 6djq:A, 6djq:C, 6djq:D, 6vjf:A, 6vjf:B, 6vjf:C, 6vjf:D
5 6djq:B 330 352 0.5084 0.5515 0.5170 5.08e-121
6 6dlu:P 747 311 0.4832 0.2316 0.5563 3.83e-118 2aka:B, 5d3q:A, 5d3q:B, 6dlu:B, 6s9a:B, 2x2e:A, 2x2e:D, 2x2f:A, 2x2f:D, 3zyc:A, 3zyc:D
7 7ax3:D2 582 307 0.4749 0.2921 0.5537 9.31e-118 7ax3:B2, 7ax3:B, 7ax3:D, 7ax3:F, 7ax3:H, 7ax3:J, 7ax3:M, 7ax3:O, 7ax3:Q, 7ax3:S, 7ax3:U, 7ax3:W, 7ax3:Y, 7ax3:E2, 7ax3:G2, 7ax3:H2, 7ax3:I2, 7ax3:J2
8 8sxz:c 699 311 0.4804 0.2461 0.5531 1.95e-117 8sxz:b, 8sxz:f, 8sxz:g, 8sz8:b, 8sz8:c, 8sz8:f, 8sz8:g, 8t0k:b, 8t0k:c, 8t0k:f, 8t0k:g, 8t0r:b, 8t0r:c, 8t0r:f, 8t0r:g, 8tym:c, 8tym:f, 8tym:B, 8tym:C, 8tyn:c, 8tyn:f, 8tyn:C, 8tyn:F
9 1jwy:A 1039 311 0.4832 0.1665 0.5563 7.38e-108 4ae3:A, 2aka:A, 7b19:A, 7b1a:A, 3bz7:A, 3bz8:A, 3bz9:A, 1d0x:A, 1d0y:A, 1d0z:A, 1d1a:A, 1d1b:A, 1d1c:A, 1fmw:A, 2jhr:A, 2jj9:A, 1jx2:A, 1lvk:A, 3mjx:A, 3mkd:A, 1mma:A, 1mmd:A, 1mmg:A, 1mmn:A, 1mne:A, 3mnq:A, 3myh:X, 3myk:X, 3myl:X, 4pjk:A, 1vom:A, 1w9i:A, 1w9j:A, 1w9k:A, 1w9l:A, 2x9h:A, 2xel:A, 2xo8:A, 2y8i:X, 1yv3:A, 6z2s:A, 6z7t:A, 6z7t:B, 6z7u:A
10 6s9a:A 312 357 0.4749 0.5449 0.4762 1.15e-102
11 3l43:B 246 270 0.4050 0.5894 0.5370 1.41e-93 3l43:A, 3l43:C, 3l43:D
12 3t34:B 341 319 0.4190 0.4399 0.4702 3.89e-92 3t34:A, 3t35:A, 3t35:B, 3t35:C, 3t35:D
13 4p4s:B 336 326 0.3436 0.3661 0.3773 3.04e-55 4p4s:A, 4p4t:A
14 6jsj:A 625 254 0.2821 0.1616 0.3976 1.49e-36 6jsj:B, 6jsj:C
15 8eew:A 766 256 0.2207 0.1031 0.3086 3.73e-24 8eew:B, 8eff:A, 8eff:B, 8eff:C, 8eff:D, 8efr:A, 8efr:B, 8efr:C, 8efr:K, 8efr:D, 8efr:L, 8efr:E, 8efr:M, 8efr:F, 8efr:N, 8efr:G, 8efr:O, 8efr:H, 8efr:P, 8efr:I, 8efr:Q, 8efr:J, 8efr:R, 6jtg:A
16 5oxf:C 601 66 0.0615 0.0366 0.3333 0.034 5oxf:D
17 1nw8:A 272 101 0.0698 0.0919 0.2475 0.26 1eg2:A, 1nw5:A, 1nw6:A, 1nw7:A
18 5goe:A 384 33 0.0363 0.0339 0.3939 0.60 5gns:A, 5gnt:A
19 5gom:A 407 33 0.0363 0.0319 0.3939 0.65 5gnr:A, 5gof:A, 5gom:B, 5yew:A, 5yew:B, 5yew:C
20 6ha8:V 541 59 0.0615 0.0407 0.3729 0.68
21 5z19:B 601 138 0.1117 0.0666 0.2899 1.5 6jz2:A, 6jz2:B, 6jz3:A, 6jz3:B, 6jz4:B, 6jz6:A, 6jz6:B, 6jz8:A, 5z19:A, 5z19:C, 5z19:D, 5z19:E, 5z19:F
22 6jz4:A 576 138 0.1117 0.0694 0.2899 1.6 6jz5:A, 6jz5:B, 6jz7:A, 6jz7:B, 6jz8:B
23 2d5w:A 602 119 0.0698 0.0415 0.2101 1.7 2d5w:B
24 5ksz:A 398 22 0.0307 0.0276 0.5000 2.3 5kso:A, 5ksp:A, 5ksp:B, 5ksy:A, 5kty:A, 5ku1:A
25 2w2l:A 346 57 0.0475 0.0491 0.2982 2.6 2w2l:B, 2w2l:C, 2w2l:D
26 1lvg:A 190 176 0.1145 0.2158 0.2330 3.1
27 5c2v:B 352 145 0.0810 0.0824 0.2000 3.3 5c2v:E, 5c2w:B, 5c2w:E
28 2j68:A 680 33 0.0363 0.0191 0.3939 3.6 2w6d:A, 2w6d:B
29 1svw:A 190 29 0.0363 0.0684 0.4483 4.5 1svi:A, 1svw:B
30 2c03:B 297 98 0.0838 0.1010 0.3061 4.9 2c03:A, 2cnw:A, 2cnw:B, 2cnw:C, 2j7p:A, 2j7p:B, 1jpj:A, 1jpn:B, 1jpn:A, 1ls1:A, 1ng1:A, 2ng1:A, 1o87:A, 1o87:B, 1okk:A
31 4eue:A 398 74 0.0559 0.0503 0.2703 5.1 4euf:A
32 4bm1:A 337 55 0.0559 0.0593 0.3636 6.1 4bm1:B, 4bm2:A, 4bm3:A, 4bm4:A
33 7v8i:D 229 51 0.0447 0.0699 0.3137 6.1 7arj:F, 7arj:D, 7ark:D, 7ark:F, 7arl:F, 7arl:D, 7mdy:D, 7mdy:C, 7v8i:F
34 6hiv:CO 361 58 0.0475 0.0471 0.2931 6.8 7aor:i, 6hiw:CO, 6hiy:CO, 7pua:CO, 7pub:CO, 6sga:CO, 6sgb:CO
35 6mvg:A 637 72 0.0447 0.0251 0.2222 7.7 6mvg:B, 6mvg:C
36 6dew:A 195 60 0.0587 0.1077 0.3500 7.8 6dew:B
37 8kab:h 430 28 0.0307 0.0256 0.3929 7.9
38 7ane:i 267 58 0.0475 0.0637 0.2931 8.7
39 7aih:Az 138 41 0.0419 0.1087 0.3659 9.9 7am2:Az, 7ane:Az

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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