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BioLiP
>protein
MDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQS
QPIEIYGPVGLRDFIWRTMELSHTELVFHYVVHELVPTADQCPAQGRTILLDSEENSYLLFDDEQFVVKAFRLFHRIPSF
GFSVVEKKVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATFAKLCRAKRLVLTHFS
QRYQEVTLAEDFMVISIPI

The query sequence (length=259) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3zwf:A 259 259 1.0000 1.0000 1.0000 0.0 3zwf:B
2 1y44:A 269 259 0.3745 0.3606 0.3745 7.23e-52
3 2fk6:A 307 297 0.3707 0.3127 0.3232 1.59e-44 4gcw:A
4 2cbn:A 306 325 0.3745 0.3170 0.2985 2.98e-41
5 8cbl:E 692 264 0.3205 0.1199 0.3144 4.19e-21
6 8cbl:E 692 79 0.0927 0.0347 0.3038 6.73e-06
7 5mtz:A 768 287 0.2703 0.0911 0.2439 4.95e-13 5mtz:B
8 5mtz:A 768 70 0.0849 0.0286 0.3143 0.002 5mtz:B
9 8gyg:B 305 156 0.1815 0.1541 0.3013 4.65e-11 8gyg:A
10 7xgt:B 275 229 0.2510 0.2364 0.2838 4.36e-09 7xgt:A
11 6j4n:A 372 264 0.2124 0.1478 0.2083 2.69e-08 7byq:A, 7byq:B, 7byq:C, 7byq:D, 7bz1:A, 7bz1:B, 7bz1:C, 7bz1:D, 7bz3:A, 7bz3:B, 7bz4:A, 7bz4:B, 7bz4:C, 7bz4:D, 7bzi:G, 7bzi:B, 7bzi:C, 7bzi:F, 7bzi:E, 7bzi:D, 7bzi:A, 7bzi:H, 6j4n:B, 6j4n:C, 6j4n:D, 6j4n:E, 6j4n:F, 6j4n:G, 6j4n:H, 6jkw:A, 6jkw:B, 6jkw:C, 6jkw:D, 6jkw:E, 6jkw:F, 6jkw:G, 6jkw:H, 7wi1:A, 7wi1:G, 7wi1:C, 7wi1:E, 7wi1:D, 7wi1:F, 7wi1:B, 7wi1:H
12 7bz3:C 335 188 0.1622 0.1254 0.2234 1.12e-07 7bz3:D
13 7t28:A 238 98 0.1120 0.1218 0.2959 3.52e-06
14 1zkp:A 251 243 0.2201 0.2271 0.2346 3.99e-05 1zkp:B, 1zkp:C, 1zkp:D
15 7u2s:A 248 97 0.1004 0.1048 0.2680 4.48e-05 7u2s:B
16 2e7y:A 272 243 0.2510 0.2390 0.2675 8.61e-05 2e7y:B
17 7fct:B 239 94 0.0888 0.0962 0.2447 0.001 7fct:A
18 7u2r:A 244 72 0.0888 0.0943 0.3194 0.089
19 6kns:A 246 65 0.0618 0.0650 0.2462 0.091 6kns:B, 6kns:C, 6kns:D, 6knt:A, 6knt:B, 6knt:C, 6knt:D
20 2p4z:B 276 58 0.0811 0.0761 0.3621 0.10 2p4z:A
21 5aij:A 630 49 0.0579 0.0238 0.3061 0.21 5a23:A, 5a23:B, 5a23:C, 5a23:D, 5ajl:A, 5ajl:B, 2cfu:A, 2cfz:A, 2cg2:A, 2cg3:A
22 7pt6:8 402 68 0.0888 0.0572 0.3382 0.21 7pt6:H, 7pt7:8, 7v3v:H
23 4nur:A 633 39 0.0425 0.0174 0.2821 0.37 4nur:B
24 2i7v:A 433 69 0.0734 0.0439 0.2754 0.74 8t1q:A, 8t1r:A
25 6v4x:H 499 69 0.0734 0.0381 0.2754 0.76 6m8q:A, 6m8q:B
26 6b9v:A 254 57 0.0656 0.0669 0.2982 0.77 6b9v:B
27 2i7t:A 404 69 0.0734 0.0470 0.2754 0.78
28 6k6s:A 443 176 0.1622 0.0948 0.2386 0.84 6k6s:B
29 4q6r:B 444 83 0.1042 0.0608 0.3253 0.93 4q6r:A
30 3zq4:A 550 47 0.0734 0.0345 0.4043 1.5 3zq4:C, 3zq4:D, 3zq4:E
31 7y7u:A 288 29 0.0425 0.0382 0.3793 2.1 7y7u:B
32 3t3o:A 553 36 0.0579 0.0271 0.4167 2.5 3bk1:A, 3bk2:A, 3t3n:A
33 6i1d:A 458 91 0.0811 0.0459 0.2308 2.9
34 5i0p:B 323 49 0.0579 0.0464 0.3061 3.0 5i0p:A
35 6c2c:A 299 55 0.0734 0.0635 0.3455 3.0 6c2c:B, 5hif:A, 5hif:B
36 7xjv:B 514 49 0.0734 0.0370 0.3878 3.1 7xjv:A, 7xjv:C, 7xjv:D
37 1p9e:A 294 55 0.0734 0.0646 0.3455 3.3 1p9e:B
38 5u8o:B 360 49 0.0579 0.0417 0.3061 4.2 5i0p:C, 5i0p:D, 5u8o:A, 5u8o:C, 5u8o:D
39 2yhe:A 639 39 0.0386 0.0156 0.2564 4.4 4av7:A, 4av7:B, 4av7:C, 4av7:D, 4av7:E, 4av7:F, 4axh:A, 4axh:B, 2yhe:B, 2yhe:C, 2yhe:D, 2yhe:E, 2yhe:F
40 4le6:A 257 30 0.0463 0.0467 0.4000 4.8 4le6:B, 4le6:C, 4le6:D, 4le6:E
41 4o98:B 307 30 0.0463 0.0391 0.4000 5.3 4o98:A
42 4zo2:B 294 59 0.0734 0.0646 0.3220 5.3 4zo2:A, 4zo3:A, 4zo3:B
43 3g1p:B 250 201 0.1506 0.1560 0.1940 6.5 3g1p:A, 3p2u:A, 3p2u:B
44 6q55:A 461 58 0.0695 0.0390 0.3103 6.7 6q5a:A
45 5gyn:A 295 60 0.0656 0.0576 0.2833 7.3 5aes:A, 5aes:B, 4bx0:A, 4bx2:A, 4bx2:B, 4bx3:A, 4bx3:B, 2cfr:A, 2cfs:A, 2cft:A, 9em1:A, 2oyc:A, 2p27:A, 2p69:A, 8qfw:A, 8qfw:B, 8s8a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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