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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL
RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIE
SNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEG
LIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHF
GEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKSD

The query sequence (length=359) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1m6e:X 359 359 1.0000 1.0000 1.0000 0.0
2 6lyh:A 358 360 0.4178 0.4190 0.4167 3.09e-93 6lyh:B, 6lyh:C, 6lyh:D, 6lyh:E, 6lyh:F, 6lyh:G, 6lyh:H
3 8t2g:A 333 340 0.3844 0.4144 0.4059 3.25e-84 8t2g:B, 8uzd:A, 8uzd:B
4 2eg5:E 346 360 0.4011 0.4162 0.4000 3.05e-80 2eg5:A, 2eg5:C, 2eg5:G
5 2efj:A 348 366 0.3788 0.3908 0.3716 7.61e-73
6 6c8r:A 358 370 0.3705 0.3715 0.3595 4.47e-64 6c8r:B, 6c8s:A, 6c8s:B
7 3b5i:A 344 289 0.3008 0.3140 0.3737 1.02e-49 3b5i:B
8 5f2k:A 358 318 0.2423 0.2430 0.2736 7.07e-24 5f2k:B, 5f2n:A, 5f2n:B, 5f2o:A, 5f2o:B
9 7vw6:A 913 98 0.0752 0.0296 0.2755 2.3 7e5z:A, 8j83:A, 7xqw:A
10 6zr7:AAA 292 51 0.0390 0.0479 0.2745 3.6
11 6ms8:G 209 85 0.0613 0.1053 0.2588 5.2 6ms8:A, 6ms8:D, 6ms8:E, 6ms8:F
12 6ks6:b 518 83 0.0613 0.0425 0.2651 5.6 6ks6:B, 4v81:B, 4v81:J, 4v81:b, 4v8r:AB, 4v8r:Ab, 4v8r:BB, 4v8r:Bb, 4v94:B, 4v94:J, 4v94:b, 4v94:j, 7ylw:B, 7ylw:b, 7ylx:B, 7ylx:b, 7yly:B, 7yly:b
13 7y9y:A 1482 66 0.0557 0.0135 0.3030 5.8 8wml:A
14 5ymx:A 202 30 0.0390 0.0693 0.4667 8.4 6h17:A, 6h35:A, 6h35:B, 6h5b:A, 6hjh:A, 6hjo:A, 6hjo:B, 6izw:A, 5ymx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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