Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDSIIPAGVKLDDLQVILAKNENETRDKVCKQINEARDEILPLRLQFNEFIQIMANIDQEGSKQADRMAKYLHIRDKILQ
LNDRFQTLSSHLEALQPLFSTVPEYLK

The query sequence (length=107) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uio:Bc 107 107 1.0000 1.0000 1.0000 1.04e-75
2 7qep:D0 93 87 0.2056 0.2366 0.2529 0.34
3 8k3f:A 190 33 0.1215 0.0684 0.3939 0.36 8k3f:B, 8k3f:C, 8k3f:D
4 6jwz:B 565 85 0.2430 0.0460 0.3059 0.43 6jwr:A, 6jwr:B, 6jwv:A, 6jww:A, 6jww:B, 6jwx:A, 6jwy:A, 6kcl:A, 6kcm:A
5 6kcl:B 545 68 0.1963 0.0385 0.3088 0.70 6jwu:B, 6jwv:B, 6jwx:B, 6jwy:B
6 6qex:A 1182 76 0.2150 0.0195 0.3026 1.2 7a65:A, 7a69:A, 7a6c:A, 7a6e:A, 7a6f:A, 6c0v:A, 7o9w:A
7 4m1m:A 1188 76 0.2150 0.0194 0.3026 1.6 8avy:A, 6fn1:A, 3g60:A, 3g60:B, 3g61:A, 3g61:B, 5koy:A, 5koy:B, 4m1m:B, 4m2s:A, 4m2s:B, 4m2t:A, 4m2t:B, 7otg:A, 8pee:A, 6q81:A, 4q9i:A, 4q9j:A, 4q9k:A, 4q9l:A, 6qee:A, 6ujn:A, 6ujp:A, 6ujr:A, 6ujs:A, 6ujt:A, 6ujw:A, 4xwk:A, 7zk4:A, 7zk5:A, 7zk6:A, 7zk7:A, 7zk8:A, 7zk9:A, 7zka:A, 7zkb:A
8 8byk:A 437 81 0.2150 0.0526 0.2840 1.7
9 4r21:B 423 89 0.2056 0.0520 0.2472 5.0 4r20:A, 4r20:B, 4r21:A
10 4qgr:A 376 37 0.1121 0.0319 0.3243 5.9 4qgr:B
11 7ui5:A 114 46 0.1869 0.1754 0.4348 6.2 6ds2:B, 6ds2:D, 6ds2:F, 6ds2:H, 4ggf:C, 4ggf:L, 4ggf:T, 4ggf:V, 1irj:A, 1irj:B, 1irj:C, 1irj:D, 1irj:E, 1irj:F, 1irj:G, 1irj:H, 7quv:B, 8sjb:C, 8sjb:D, 8sjc:C, 8sjc:D, 7ui5:B, 5w1f:B, 5w1f:D, 5w1f:H, 5w1f:F, 4xjk:B, 4xjk:D, 4xjk:F, 4xjk:H, 4xjk:J, 1xk4:C, 1xk4:D, 1xk4:G, 1xk4:H, 1xk4:K, 1xk4:L
12 6xu4:A 389 40 0.1402 0.0386 0.3750 6.6 6xu4:B, 6xu4:E
13 4cib:A 413 30 0.1215 0.0315 0.4333 6.9 4az0:A, 4az0:B, 4az3:A, 4az3:B, 4cia:A
14 8toc:a 534 38 0.1215 0.0243 0.3421 7.5 8toc:b
15 2o2z:A 310 46 0.1121 0.0387 0.2609 8.5 2o2z:B, 2o2z:C, 2o2z:D
16 8ro0:R 282 45 0.1215 0.0461 0.2889 9.0 8ro1:R

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218