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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDRYGVLAYHSVVDDTAAKEEKQYFPQTISANLLISHFNWLKDNGYNVVSWQQIIDAENGKSTLPEKAVVLSFDDGYATM
YNVIYPILKAYNYPAVFAPVSSWLDTPVNQLIPYANIKLPRNVFVTWDQVREMEQSGLVEIASHTDNLHHGVRANPAGSQ
LPAVVAPEYKNNRYESKTEYKNRLVQDFSRSSKSIQRQIGKKPRIMVWPYGQFNDVAIDAAKQSGMTHHFALGQKIINKI
GDRYVGRLLIDTETGFSTIKNFLD

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4u10:A 264 264 1.0000 1.0000 1.0000 0.0 4u10:B
2 4f9j:A 599 233 0.3636 0.1603 0.4120 1.66e-56 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
3 4wcj:A 233 251 0.2348 0.2661 0.2470 8.54e-18
4 6dq3:A 227 217 0.2008 0.2335 0.2442 4.25e-08 6dq3:B
5 6go1:A 318 187 0.1591 0.1321 0.2246 5.69e-06 6go1:B
6 4hd5:A 316 219 0.1856 0.1551 0.2237 0.005 4v33:A, 4v33:B
7 6zu5:LT0 160 70 0.0909 0.1500 0.3429 0.21
8 6u0p:C 585 39 0.0568 0.0256 0.3846 1.0 6u0p:A, 6u0p:B, 6u0p:D, 6u0p:E, 6u0p:F, 6u0s:A, 6u0s:B, 6u0s:C, 6u0s:D, 6u0s:E, 6u0s:F
9 8he1:A 225 33 0.0455 0.0533 0.3636 1.5 8he2:A, 8he4:A, 8hf9:A
10 2dpd:B 117 55 0.0568 0.1282 0.2727 1.5 2dpd:A, 2dpu:A, 2efw:A, 2efw:B, 2efw:F, 2efw:G, 1f4k:A, 1f4k:B
11 2onf:A 140 53 0.0758 0.1429 0.3774 1.7 2onf:B
12 5jp6:A 339 50 0.0720 0.0560 0.3800 3.7
13 5og1:A 819 56 0.0606 0.0195 0.2857 4.3 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
14 7ax7:A 205 32 0.0455 0.0585 0.3750 4.8
15 2gru:A 367 61 0.0720 0.0518 0.3115 6.2 2d2x:A, 2d2x:B, 2gru:B
16 3a9g:A 338 69 0.0833 0.0651 0.3188 9.2 3a9h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218