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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPSLTVKSPERKAARKAAGKSEN
PVRVVVDSSARTPLNADIFKKGEGLRIIAVSNSAPEEKIRMLEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGAT
LNWGMLSAGLVDEVYTFVGNLIIGGKTAPTFTDGEGFTENELLGLELSSAEKIEDGILLKWKVK

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xv0:F 239 224 0.9955 0.9331 0.9955 2.47e-161 5xux:A, 5xux:B, 5xux:C, 5xux:D, 5xux:E, 5xux:F, 5xv0:A, 5xv0:B, 5xv0:C, 5xv0:D, 5xv0:E, 5xv2:A
2 6p8c:A 216 223 0.4509 0.4676 0.4529 1.29e-56 6p8c:B
3 2azn:A 219 227 0.4688 0.4795 0.4626 3.72e-55 2azn:B, 2azn:C, 2azn:D, 2azn:E, 2azn:F
4 4g3m:A 361 195 0.2589 0.1607 0.2974 2.22e-20 2b3z:A, 2b3z:B, 2b3z:C, 2b3z:D, 2d5n:A, 2d5n:B, 2d5n:C, 2d5n:D, 3ex8:A, 3ex8:B, 3ex8:C, 3ex8:D, 4g3m:B, 4g3m:C, 4g3m:D
5 8dqb:A 370 216 0.3036 0.1838 0.3148 1.35e-19 8dq9:A, 8dq9:B, 8dqc:A, 8dqc:B
6 2o7p:A 358 187 0.2679 0.1676 0.3209 1.96e-18 2o7p:B, 2obc:A
7 3zpc:A 357 192 0.2277 0.1429 0.2656 1.71e-13 3zpc:B, 3zpg:A
8 4ha9:A 219 188 0.2411 0.2466 0.2872 1.48e-11
9 2hxv:A 349 183 0.2500 0.1605 0.3060 2.60e-11
10 6de5:A 246 149 0.1786 0.1626 0.2685 9.63e-08 4xrb:A, 4xt4:A, 4xt5:A, 4xt6:A, 4xt7:A, 4xt8:A
11 7w0j:E 382 53 0.0848 0.0497 0.3585 0.57 8i4p:A, 8i4r:A, 7w0j:B, 7w0j:C, 7w0j:H
12 3n1c:A 309 87 0.0982 0.0712 0.2529 0.73 3cqd:A, 3cqd:B, 3n1c:D, 3n1c:B, 3n1c:C, 3umo:A, 3umo:B, 3ump:A, 3ump:B, 3uqd:A, 3uqd:C, 3uqd:B, 3uqd:D, 3uqe:A, 3uqe:B
13 5ee7:A 416 66 0.0938 0.0505 0.3182 1.7
14 8dy7:C 1118 67 0.1027 0.0206 0.3433 3.6 8dy9:C, 8hvr:C, 8jke:C, 8k60:C, 7vpd:C, 7vpz:C, 7x74:C, 7x75:C, 7x76:C
15 1d1g:A 164 55 0.0848 0.1159 0.3455 4.5 1d1g:B
16 6qfo:A 1348 74 0.0982 0.0163 0.2973 4.6 8a19:A, 8a1a:A, 6qep:A, 6qev:B, 6qfk:A, 6sh9:B, 2zxq:A
17 7dut:A 220 30 0.0580 0.0591 0.4333 4.9 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
18 4r1q:E 496 50 0.0580 0.0262 0.2600 5.7 4r1p:A, 4r1p:B, 4r1p:C, 4r1p:D, 4r1p:E, 4r1p:F, 4r1q:A, 4r1q:D, 4r1q:B, 4r1q:F, 4r1q:C
19 7cyy:C 497 50 0.0580 0.0262 0.2600 5.9 7cx7:A, 7cx7:B, 7cx7:C, 7cx7:D, 7cx7:E, 7cx7:F, 7cyy:A, 7cyy:B, 7cyy:D, 7cyy:E, 7cyy:F
20 4xco:C 157 51 0.0804 0.1146 0.3529 7.7
21 6l3h:A 741 35 0.0670 0.0202 0.4286 9.0 6l3h:B
22 3oa4:A 138 49 0.0625 0.1014 0.2857 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218