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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDNLIQPTKTIVDDKGQSIDGKSVLPNSTLTYVAKQDFDQYKGMTAAKESVMKGFIYVDDYKDEAIDGHSLVVNSIKAAN
GDDVTNLLEMRHVLSQDTLDDKLKALIKASGISPVGEFYMWVAKDPAAFYKAYVQKGLDITYNLSFKLKQDFKKGDITNQ
TYQIDFGNGYYGNIVVNHLSELTVHKDVFDKEGGQSINAGTVKVGDEVTYRLEGWVVPTNRGYDLTEYKFVDQLQHTHDL
YQKDKVLATVDITLSDGSVITKGTDLAKYTETVYNKETGHYELAFKQDFLAKVVRSSEFGADAFVVVKRIKAGDVANEYT
LYVNGNPVKSNKVTTHT

The query sequence (length=337) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ofq:A 337 337 1.0000 1.0000 1.0000 0.0 4ofq:B
2 6e3f:A 497 326 0.3650 0.2475 0.3773 3.61e-60 3opu:A, 3opu:B, 3opu:C, 3opu:D, 3opu:E, 3opu:F, 3qe5:A, 3qe5:B
3 4tsh:B 485 324 0.3412 0.2371 0.3549 2.87e-53
4 7l0o:A 479 323 0.3412 0.2401 0.3560 8.25e-53 7l0o:B, 2woy:A, 2wqs:A, 2wza:A
5 8beg:A 650 339 0.2938 0.1523 0.2920 1.47e-23 8beg:B
6 8beg:A 650 193 0.1721 0.0892 0.3005 3.15e-09 8beg:B
7 8wvd:A 450 49 0.0475 0.0356 0.3265 0.28 6l8z:A
8 7ux7:A 378 126 0.0890 0.0794 0.2381 0.33 7ux6:A, 7ux6:B, 7ux7:B, 7ux8:A, 7ux8:B
9 4g33:A 661 59 0.0504 0.0257 0.2881 0.67 4g32:A, 5ir4:A, 5ir5:A, 5lc8:A, 4rpe:A
10 3oss:D 157 56 0.0534 0.1146 0.3214 1.0
11 5yjg:A 594 68 0.0564 0.0320 0.2794 1.9 5yjh:A
12 1pj6:A 828 75 0.0564 0.0229 0.2533 3.6 3gsi:A, 1pj5:A, 1pj7:A
13 1r9q:A 309 135 0.0979 0.1068 0.2444 5.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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