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BioLiP
>protein
MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVIS
DTEIIFIDQETNTFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPKIGIAYSFQKGDFLADPWDVQLDLI
INDE

The query sequence (length=164) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1u3f:A 164 164 1.0000 1.0000 1.0000 4.26e-120 1u3f:B, 1u3g:A
2 3hy6:A 198 159 0.2439 0.2020 0.2516 4.76e-07 3hxt:A, 3hy3:A, 3hy4:A
3 2jcb:A 194 185 0.3171 0.2680 0.2811 0.003 2jcb:B
4 6z1p:Ar 143 91 0.1524 0.1748 0.2747 1.5
5 8gjh:A 639 33 0.0671 0.0172 0.3333 4.5 8gjh:B, 8gjh:C, 8gjh:D, 8gjh:E, 8gjh:F
6 8t7m:B 160 41 0.0671 0.0688 0.2683 6.9 8t7l:A, 8t7l:B, 8t7m:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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