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BioLiP
>protein
MDGVHDLAGVQGFGKVPHTVNADIGPTFHAEWEHLPYSLMFAGVAELGAFSVDEVRYVVERMEPRHYMMTPYYERYVIGV
ATLMVEKGILTQDELESLAGGPFPLSRPSESEGRPAPVETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEK
WPFPDAIGHGRNDAGEEPTYHVKFAAEELFGSDTDGGSVVVDLFEGYLEPA

The query sequence (length=211) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3a8g:B 212 211 1.0000 0.9953 1.0000 4.15e-156 3a8h:B, 3a8m:B, 3a8o:B, 2cz1:B, 2cz6:B, 2d0q:B, 2qdy:B, 3x26:B
2 4ob0:B 228 230 0.3318 0.3070 0.3043 1.48e-20
3 2dd4:H 156 93 0.1185 0.1603 0.2688 0.32 2dd4:B, 2dd4:K, 2dd4:E, 2zzd:B, 2zzd:H
4 5jne:A 351 98 0.1327 0.0798 0.2857 1.3 3i2d:A, 5jne:E
5 4omb:A 298 98 0.1185 0.0839 0.2551 4.4 4omb:B, 4omb:C, 4omb:D
6 5by6:B 288 53 0.0758 0.0556 0.3019 5.1 5by6:A, 5by6:C, 5by6:D, 5m4z:A, 5m4z:B
7 6nyy:C 491 60 0.0853 0.0367 0.3000 5.6 6nyy:B, 6nyy:D, 6nyy:E, 6nyy:A, 6nyy:F
8 4iuh:A 143 20 0.0474 0.0699 0.5000 6.4 4iuh:B, 4iuk:A, 4iuk:B
9 8jjr:D 177 30 0.0664 0.0791 0.4667 7.7
10 5nqz:A 267 103 0.1232 0.0974 0.2524 8.5 5nqz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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