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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDETVAEFIKRTILKIPMNELTTILKAWDFLSENQLQTVNFRQRKESVVQHLIHLCEEKRASISDAALLDIIYMQFHQHQ
KVWDVFQMSKGFDMKQFKNSFKKILQRALKNVTVSFRETEENAVWIRIAWGTQYTKPNQYKPTYVVYYSQTPYAFTSSSM
LRRNTPLLGQALTIASKHHQIVKMDLRSRYLDSLKAIVFKQYNQT

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7qoo:N 320 212 0.9951 0.6375 0.9623 2.16e-150 6c0w:K, 6muo:M, 6mup:M, 6mup:N, 7r5s:N, 7u46:K, 7u47:K, 7u47:V, 7u4d:K, 7u4d:V, 7xhn:N, 7xho:N, 7ywx:N
2 7r5v:N 297 202 0.9707 0.6700 0.9851 4.24e-147 7yyh:N
3 7bxt:M 198 201 0.5512 0.5707 0.5622 1.68e-82 7bxt:N
4 6buz:N 134 178 0.6537 1.0000 0.7528 1.68e-80
5 4rh7:A 3005 32 0.0683 0.0047 0.4375 0.13
6 6sc2:B 3930 32 0.0683 0.0036 0.4375 0.15 6rla:A, 6rla:B, 6sc2:A
7 8y6k:A 741 60 0.0829 0.0229 0.2833 0.74 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
8 6knh:C 384 137 0.1512 0.0807 0.2263 1.4 6knh:A, 6knh:B, 6kni:A, 6kni:B, 6kni:C, 6knk:A, 6knk:B, 6knk:C
9 2chq:A 313 43 0.0537 0.0351 0.2558 6.3 2chg:A, 2chg:B, 2chg:C, 2chg:D, 2chq:B, 2chq:C
10 5ho2:A 803 49 0.0780 0.0199 0.3265 9.6 5ho0:A, 5ho9:A, 5ho9:B, 5hof:A, 5hon:A, 5hon:B, 5hp6:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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