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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDDLLQRVRRCEALQQPEWGDPSRLRDVQAYLRGSPALIRAGDILALRATLARVARGEALVVQCGDCAEDMDDHHAENVA
RKAAVLELLAGALRLAGRRPVIRVGRIAGQYAKPRSKPHEQTLPVYRGDMVNGREAHAEQRRADPQRILKGYAAARNIMR
HLGWDAASASPVWTSHEMLLLDYELSMLREDEQRRVYLGSTHWPWIGERTRQVDGAHVALLAEVLNPVACKVGPEIGRDQ
LLALCERLDPRREPGRLTLIARMGAQKVGERLPPLVEAVRAAGHPVIWLSDPMHGNTIVAPCGNKTRLVRSIAEEVAAFR
LAVSGSGGVAAGLHLETTPDDVTECVADSSGLHQVSRHYTSLCDPRLNPWQALSAVMAWS

The query sequence (length=380) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6bmc:A 380 380 1.0000 1.0000 1.0000 0.0 6bmc:B
2 5hud:D 457 430 0.4316 0.3589 0.3814 1.70e-86 5huc:A, 5hud:A, 5hud:B, 5hud:C, 5hue:A
3 5uxm:A 445 417 0.4263 0.3640 0.3885 5.66e-85 5uxn:A, 5uxo:A
4 3nv8:B 464 418 0.4158 0.3405 0.3780 7.14e-80 2b7o:A, 2b7o:B, 5ckv:A, 5ckv:B, 5ckx:A, 5ckx:B, 5e2l:A, 5e2l:B, 5e40:A, 5e40:B, 5e4n:A, 5e4n:B, 5e5g:A, 5e5g:B, 5e7z:A, 5e7z:B, 5ex4:A, 5ex4:B, 3kgf:A, 3kgf:B, 3nud:A, 3nud:B, 3nue:A, 3nue:B, 3nv8:A, 6pbj:A, 6pbj:B, 3pfp:A, 3pfp:B, 3rzi:A, 3rzi:B, 2w1a:A, 2w1a:B, 2ypo:A, 2ypo:B, 2ypp:A, 2ypp:B, 2ypq:A, 2ypq:B
5 7xu5:B 938 63 0.0579 0.0235 0.3492 0.83 7xu5:A, 7xu5:C
6 1iri:A 557 214 0.1263 0.0862 0.2243 0.90 1dqr:A, 1dqr:B, 1g98:A, 1g98:B, 1gzv:A, 1hox:A, 1hox:B, 1iri:B, 1iri:C, 1iri:D, 1koj:A, 1koj:B, 1nuh:A, 1xtb:A, 1xtb:B, 6xuh:A, 6xuh:B, 6xuh:C, 6xuh:D, 6xui:A, 6xui:B, 6xui:C, 6xui:D
7 8ide:A 929 89 0.0868 0.0355 0.3708 1.1
8 5vye:B 344 55 0.0526 0.0581 0.3636 5.7 5vye:A, 5vye:C, 5vye:D
9 6djt:A 298 87 0.0605 0.0772 0.2644 7.2
10 4o23:A 376 82 0.0500 0.0505 0.2317 8.6 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B
11 8q6p:7 298 65 0.0526 0.0671 0.3077 8.7
12 7xog:B 348 63 0.0553 0.0603 0.3333 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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