Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISLAS
LEYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKK
MAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQ
QDVPDKFKYKQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLAA

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ecs:C 294 294 1.0000 1.0000 1.0000 0.0 3ecs:B, 3ecs:D, 3ecs:E, 3ecs:F, 3ecs:G, 3ecs:H, 7kma:A, 7kma:C, 7kma:D, 7kma:E, 7kma:F, 7kma:G, 7kma:H, 7kmf:H, 7kmf:G
2 7kma:B 268 290 0.9082 0.9963 0.9207 0.0
3 3a9c:B 325 233 0.2381 0.2154 0.3004 5.68e-27 3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C
4 6o85:E 357 205 0.2143 0.1765 0.3073 4.85e-26
5 5yfj:A 322 191 0.1973 0.1801 0.3037 5.62e-26 5yfj:B, 5yfj:C, 5yfs:A, 5yfs:B, 5yfs:C, 5yft:A, 5yft:B, 5yft:C, 5yfu:A, 5yfu:B, 5yfu:C, 5yfv:A, 5yfv:B, 5yfv:C, 5yfw:A, 5yfw:B, 5yfw:C, 5yfx:A, 5yg5:A, 5yg5:B, 5yg5:C, 5yg6:A, 5yg6:C, 5yg6:B, 5yg7:A, 5yg7:C, 5yg7:B, 5yg8:A, 5yg8:B, 5yg8:C, 5yg9:A, 5yg9:B, 5yg9:C, 5yga:A, 5yga:B, 5yga:C
6 6caj:C 318 222 0.2313 0.2138 0.3063 5.95e-21 6caj:D, 6ezo:C, 6ezo:D, 7l7g:C, 7l7g:D, 6o81:C, 6o81:D, 6o85:C, 6o85:D
7 6jly:G 363 221 0.2041 0.1653 0.2715 5.45e-17
8 6jly:C 338 173 0.1837 0.1598 0.3121 1.04e-15 6jly:D, 6jlz:C, 6jlz:D
9 2yvk:A 349 149 0.1463 0.1232 0.2886 5.60e-10 2yrf:A, 2yrf:B, 2yvk:B, 2yvk:C, 2yvk:D
10 2z09:A 124 97 0.1054 0.2500 0.3196 1.5 2z08:A
11 3fa3:B 302 56 0.0748 0.0728 0.3929 1.6 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
12 6pcm:A 793 36 0.0510 0.0189 0.4167 3.9 6pcm:B
13 8p82:A 1596 35 0.0408 0.0075 0.3429 5.0 8p82:B
14 1v9n:A 348 27 0.0408 0.0345 0.4444 8.3
15 6n4d:D 388 45 0.0408 0.0309 0.2667 9.1 6n4d:C, 6n4d:A, 6n4d:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218