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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MAVTILYEQDVDPKVIQGLKVGIIGYGSQGHAHALNLMDSGVDVRVGLREGDSDWKTAEEAGLKVTDMDTAAEEADVIMV
LVPDEVQPKVYQEHIAAHLKAGNTLAFAHGFNIHYGYIVPPEDVNVIMCAPKGPGHIVRRQFTEGSGVPDLACVQQDATG
NAWDIVLSYCWGVGGARSGIIKATFAEETEEDLFGEQAVLCGGLVELVKAGFETLTEAGYPPELAYFECYHEMKMIVDLM
YESGIHFMNYSISNTAEYGEYYAGPKVINEQSREAMKEILKRIQDGSFAQEFVDDCNNGHKRLLEQREAINTHPIETTGA
QIRSMFSWIKKEDLE

The query sequence (length=335) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4kqx:B 335 335 1.0000 1.0000 1.0000 0.0 4kqw:A, 4kqw:B, 4kqx:A
2 4xiy:A 328 327 0.5761 0.5884 0.5902 1.06e-141 4xiy:B, 4xiy:C, 4xiy:D
3 8upq:B 342 333 0.5403 0.5292 0.5435 1.72e-134 8cy8:A, 8cy8:B, 8cy8:C, 8cy8:D, 8cy8:E, 8cy8:F, 8cy8:G, 8cy8:H, 8cy8:I, 8cy8:J, 8cy8:K, 8cy8:L, 7lat:A, 7rdu:A, 8swm:A, 8sxd:A, 8upn:A, 8upp:B, 8upp:A, 8upp:H, 8upp:K, 8upp:I, 8upp:J, 8upp:D, 8upp:E, 8upp:G, 8upp:F, 8upp:L, 8upp:C, 8upq:A, 8upq:C, 8upq:D, 8upq:F, 8upq:E
4 4ypo:A 325 325 0.5313 0.5477 0.5477 1.96e-131 4ypo:B
5 6bul:B 327 327 0.5433 0.5566 0.5566 3.44e-128 6aqj:A, 6aqj:B, 6bul:A, 6c55:A, 6c55:B, 6c5n:A, 6c5n:B, 7ke2:B, 7ke2:A, 7kh7:A, 7kh7:B, 6vo2:A, 6vo2:B, 5w3k:A, 5w3k:B
6 4tsk:A 333 330 0.5343 0.5375 0.5424 4.19e-125
7 6jx2:B 327 327 0.5343 0.5474 0.5474 1.23e-124 6jx2:A, 6jx2:C, 6jx2:D
8 6l2i:A 324 322 0.5463 0.5648 0.5683 8.80e-124 6l2i:B, 6l2z:A, 6l2z:B
9 7q03:A 328 323 0.5104 0.5213 0.5294 1.46e-122 7q07:A
10 8k32:C 333 329 0.5075 0.5105 0.5167 1.55e-122 8k32:A, 8k32:B, 8k32:D
11 8ep7:C 328 323 0.4985 0.5091 0.5170 9.39e-115 8ep7:A, 8ep7:B
12 4xdy:A 331 328 0.4806 0.4864 0.4909 1.07e-112 4xdy:B
13 5e4r:A 466 322 0.4418 0.3176 0.4596 2.72e-96 4xdz:A, 4xdz:B
14 5e4r:A 466 133 0.1761 0.1266 0.4436 3.49e-33 4xdz:A, 4xdz:B
15 5yeq:B 329 323 0.4448 0.4529 0.4613 2.95e-91
16 7pci:A 345 316 0.3194 0.3101 0.3386 4.54e-48 7pcc:A, 7pcc:B, 7pce:A, 7pcg:A, 7pcg:B, 7pcl:A, 7pcl:B, 7pcm:A, 7pcm:B, 7pcn:A, 7pcn:B, 7pco:A, 7pco:B, 7pct:A, 7pct:B
17 3ulk:A 489 313 0.3045 0.2086 0.3259 3.74e-41 3ulk:B
18 3ulk:A 489 148 0.1343 0.0920 0.3041 2.66e-11 3ulk:B
19 6jcz:C 331 306 0.3134 0.3172 0.3431 4.53e-41 6jcw:A, 6jcw:B, 6jcw:C, 6jcw:D, 6jcw:E, 6jcw:F, 6jcw:G, 6jcw:H, 6jcw:I, 6jcw:J, 6jcw:K, 6jcw:L, 6jcz:A, 6jcz:B, 6jcz:D, 6jcz:E, 6jcz:F, 6jcz:G, 6jcz:H, 6jcz:I, 6jcz:J, 6jcz:K, 6jcz:L, 6jd1:A, 6jd1:B, 6jd1:C, 6jd1:D, 6jd1:E, 6jd1:F, 6jd1:G, 6jd1:H, 6jd1:I, 6jd1:J, 6jd1:K, 6jd1:L, 6jd2:A, 6jd2:B, 6jd2:C, 6jd2:D, 6jd2:E, 6jd2:F, 6jd2:G, 6jd2:H, 6jd2:I, 6jd2:J, 6jd2:K, 6jd2:L, 6kou:A, 6kou:B, 6kou:C, 6kou:D, 6kou:E, 6kou:F, 6kou:G, 6kou:H, 6kou:I, 6kou:J, 6kou:K, 6kou:L, 6kpa:A, 6kpa:B, 6kpa:C, 6kpa:D, 6kpa:E, 6kpa:F, 6kpa:G, 6kpa:H, 6kpa:I, 6kpa:J, 6kpa:K, 6kpa:L, 6kph:A, 6kph:B, 6kph:C, 6kph:D, 6kph:E, 6kph:F, 6kph:G, 6kph:H, 6kph:I, 6kph:J, 6kph:K, 6kph:L, 6kpi:A, 6kpi:B, 6kpi:C, 6kpi:D, 6kpi:E, 6kpi:F, 6kpi:G, 6kpi:H, 6kpi:I, 6kpi:J, 6kpi:K, 6kpi:L, 6kpj:A, 6kpj:B, 6kpj:C, 6kpj:D, 6kpj:E, 6kpj:F, 6kpj:G, 6kpj:H, 6kpj:I, 6kpj:J, 6kpj:K, 6kpj:L, 6kq4:A, 6kq4:B, 6kq4:C, 6kq4:D, 6kq4:E, 6kq4:F, 6kq4:G, 6kq4:H, 6kq4:I, 6kq4:J, 6kq4:K, 6kq4:L, 6kqj:A, 6kqj:B, 6kqj:C, 6kqj:D, 6kqj:E, 6kqj:F, 6kqj:G, 6kqj:H, 6kqj:I, 6kqj:J, 6kqj:K, 6kqj:L, 6kqk:A, 6kqk:B, 6kqk:C, 6kqk:D, 6kqk:E, 6kqk:F, 6kqk:G, 6kqk:H, 6kqk:I, 6kqk:J, 6kqk:K, 6kqk:L, 6kqo:A, 6kqo:B, 6kqo:C, 6kqo:D, 6kqo:E, 6kqo:F, 6kqo:G, 6kqo:H, 6kqo:I, 6kqo:J, 6kqo:K, 6kqo:L
20 7toc:A 359 282 0.2597 0.2423 0.3085 2.96e-31 7toc:B
21 3fr8:B 517 234 0.2269 0.1470 0.3248 7.45e-29 3fr7:A, 3fr7:B, 3fr8:A
22 1qmg:A 514 236 0.2239 0.1459 0.3178 7.57e-28 1qmg:B, 1qmg:C, 1qmg:D, 1yve:I, 1yve:J, 1yve:K, 1yve:L
23 2vq3:A 181 87 0.0776 0.1436 0.2989 0.22 2vq3:B
24 5t57:A 276 118 0.0896 0.1087 0.2542 1.1
25 3two:B 348 80 0.0746 0.0718 0.3125 1.2 3two:A
26 2vhw:E 373 99 0.0716 0.0643 0.2424 1.6 4lmp:A, 6o7f:A, 2vhv:A, 2vhv:B, 2vhw:A, 2vhw:B, 2vhw:C, 2vhw:D, 2vhw:F, 2vhx:A, 2vhx:B, 2vhx:C, 2vhx:D, 2vhx:E, 2vhx:F, 2vhz:A, 2vhz:B, 2voj:A, 2voj:C, 2voj:E
27 3r7d:A 291 117 0.0985 0.1134 0.2821 1.7 3r7d:C, 3r7d:B, 3r7f:A, 3r7f:B, 3r7f:C, 3r7l:A, 3r7l:B, 3r7l:C, 3r7l:D, 3r7l:E, 3r7l:F
28 2bru:B 364 119 0.0925 0.0852 0.2605 2.1 1x14:B, 1x15:B
29 4dq1:A 312 55 0.0507 0.0545 0.3091 2.1 4dq1:B
30 6ql9:D 1765 68 0.0776 0.0147 0.3824 2.4 3hmj:A, 3hmj:B, 3hmj:C, 8prv:A, 8prv:B, 8prw:A, 8prw:B, 8prw:C, 8prw:D, 8prw:E, 8prw:F, 8ps1:A, 6ql6:F, 6ql6:E, 6ql6:D, 6ql6:C, 6ql6:B, 6ql6:A, 6ql9:F, 6ql9:A, 6ql9:E, 6ql9:B, 6ql9:C, 6ta1:A, 6ta1:B, 6ta1:D, 6ta1:K, 6ta1:F, 6ta1:I, 6u5u:A, 2vkz:A, 2vkz:B, 2vkz:C, 2wat:A, 2wat:B, 2wat:C, 2wat:D, 2wat:E, 2wat:F
31 4kwh:B 257 46 0.0478 0.0623 0.3478 3.2 4kwh:A, 4kwi:A, 4kwi:B, 4oso:A, 4oso:B
32 2yq5:C 331 68 0.0687 0.0695 0.3382 4.1 2yq5:A, 2yq5:B, 2yq5:D
33 2i9p:B 296 70 0.0657 0.0743 0.3143 4.1 2i9p:A, 2i9p:C, 2i9p:D
34 1x0x:A 350 40 0.0448 0.0429 0.3750 4.6 6e8y:A, 6e8z:A, 6e8z:B, 6e90:A, 6e90:B, 6e90:C, 6e90:D, 6pyp:A, 6pyp:B, 1wpq:A, 1wpq:B, 1x0v:A, 1x0v:B
35 5je8:B 294 64 0.0537 0.0612 0.2812 5.0 5je8:A, 5je8:C, 5je8:D
36 3dtt:B 222 42 0.0418 0.0631 0.3333 5.2 3dtt:A
37 8smr:K 181 55 0.0478 0.0884 0.2909 5.2 6q2u:A, 8smr:N, 8snh:K, 8snh:N
38 5gz9:A 280 88 0.0716 0.0857 0.2727 5.4
39 2x41:A 715 29 0.0239 0.0112 0.2759 6.1 2x42:A
40 5aov:A 334 68 0.0478 0.0479 0.2353 8.7
41 8ix9:C 314 48 0.0478 0.0510 0.3333 8.9 8ix9:B, 8ix9:A, 8ixh:A, 8ixh:B, 8ixh:C, 8ixm:A, 8ixm:B
42 6e85:A 331 217 0.1403 0.1420 0.2166 9.8
43 8hr6:A 359 34 0.0388 0.0362 0.3824 9.8 8hr6:B
44 3w6z:A 296 67 0.0657 0.0743 0.3284 10.0 3w6u:A, 3ws7:A, 5xvh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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