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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAFSSEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ
DSFGKVAAEVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAALEHHHHHH

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5lvf:A 142 142 1.0000 1.0000 1.0000 2.48e-104 2l0i:A, 5m9d:A
2 4jxt:A 130 130 0.2817 0.3077 0.3077 5.77e-15
3 4q94:A 129 130 0.2676 0.2946 0.2923 1.18e-13 9b9l:A, 4q94:B, 4q96:A, 4q96:B, 4q96:D, 4q96:E
4 3d9k:B 141 139 0.2535 0.2553 0.2590 6.92e-06 3d9k:A, 3d9l:A, 3d9l:B, 3d9m:A, 3d9m:B, 3d9n:A, 3d9n:B, 3d9o:B, 3d9p:A, 3d9p:B
5 3gkn:A 159 35 0.1056 0.0943 0.4286 0.14 3gkn:B, 5imd:A
6 7nf4:A 504 47 0.1056 0.0298 0.3191 0.67 8crd:A, 6ev3:A, 6ev4:A, 6ev5:A, 6ev6:A, 6ev7:A, 6ev8:A, 6ev9:A, 6eva:A, 6evb:A, 6evc:A, 6evd:A, 7nf3:A, 7nf4:B, 8oed:A, 8oeh:A, 8oeo:A, 6r2p:A, 6r2r:A, 6r2t:A, 6r2z:A, 6r30:A, 6r32:A, 6r33:A, 6r34:A, 6r3f:A, 6r3g:A, 6r3i:A, 6r3j:A, 6r3l:A, 6r3n:A, 6r3o:A, 6tib:AAA, 6tic:AAA, 6tie:AAA, 6tih:AAA, 6tij:AAA, 6til:AAA, 6tin:AAA, 6tio:AAA, 4za4:A, 4za5:A, 4za7:A, 4za8:A, 4za9:A, 4zaa:A, 4zab:A
7 4ktp:A 767 50 0.1197 0.0222 0.3400 0.75 4ktp:B, 4ktr:A, 4ktr:D, 4ktr:E, 4ktr:F, 4ktr:G, 4ktr:H
8 2ys6:A 421 86 0.1901 0.0641 0.3140 1.8 2yrx:A
9 4u94:A 451 17 0.0775 0.0244 0.6471 2.7 4u98:A, 4wzy:A
10 5zi5:A 850 42 0.1056 0.0176 0.3571 3.1 5zi5:B, 5zi7:A, 5zi7:B, 5zie:A, 5zie:B
11 2ccz:A 121 38 0.1127 0.1322 0.4211 4.1 2ccz:B, 1v1q:A, 1v1q:B
12 4uy7:A 327 18 0.0775 0.0336 0.6111 4.5 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
13 4i3b:A 139 29 0.0775 0.0791 0.3793 4.6 4i3b:B, 4i3b:C, 4i3b:D, 4i3b:E, 4i3b:F, 4i3c:A, 4i3c:B, 4i3d:A, 4i3d:B, 4i3d:C, 4i3d:D
14 8i9p:CB 269 19 0.0634 0.0335 0.4737 5.2 8i9r:CB, 8i9t:CB, 8i9v:CB, 8i9w:CB, 8i9x:CB, 8i9y:CB, 8i9z:CB, 8ia0:CB, 8pv1:CB, 8pv3:CB, 8pv4:CB, 8pv7:CB, 8pvk:CB, 6rxt:UZ, 6rxu:UZ, 6rxv:UZ, 6rxy:UZ, 6rxz:UZ
15 7fca:D 282 55 0.1056 0.0532 0.2727 5.5 7cf8:A, 7cf8:E, 7fca:A, 7fca:E
16 7qjt:A 267 43 0.1056 0.0562 0.3488 6.1
17 4r7p:A 485 49 0.0845 0.0247 0.2449 8.0 4r7p:B, 4r7p:C
18 8qoy:A 1036 12 0.0704 0.0097 0.8333 8.3
19 8qmf:A 678 51 0.0915 0.0192 0.2549 8.8 8qmf:B
20 6oyu:B 459 32 0.0775 0.0240 0.3438 9.1 6oyu:A, 6oyv:A, 6oyv:B
21 6gs8:A 301 10 0.0704 0.0332 1.0000 9.3 7b0e:A, 6gs8:B, 6gs8:C, 6gs8:D, 6gs8:E, 6gs8:F, 6gtm:A, 6gtm:B, 6gtm:C, 6gtm:D
22 5zog:A 316 10 0.0704 0.0316 1.0000 9.9 1ul1:X, 5zoe:A, 5zof:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218